Gene Model: AT5G62640.3 [Help]
Name (?)    AT5G62640.3
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    nuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLC
Chromosome   5
Locus (?)    AT5G62640 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  

Center on AT5G62640.3 | Full-screen view

Symbols  
symbol     full name    
ELF5     EARLY FLOWERING 5    
AtELF5        
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   nucleus
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic Araport 2017-07-27 10:41:22.0 NM_001161319  full length CDS
genomic Araport 2017-07-27 12:24:55.0 NM_001161319  full length cDNA
genomic Araport 2017-07-27 15:53:25.0 NM_001161319  full length genomic
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   INTERPRO
AT5G62640.3    540    58006.9    10.29    WW_dom-bd_prot_11:IPR019007
Map Locations
(?)		  
chrom map map type (?) coordinates orientation attrib
5 AGI nuc_sequence 25149433 - 25152541 bp reverse   details
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse     JBrowse
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   191-2958      
5' utr   1-190      
coding_region   191-271      
coding_region   551-625      
coding_region   689-782      
coding_region   959-1029      
coding_region   1155-1210      
coding_region   1321-1372      
coding_region   1449-1530      
coding_region   1631-2004      
coding_region   2124-2633      
coding_region   2731-2958      
exon   1-271      
intron   272-550      
exon   551-625      
intron   626-688      
exon   689-782      
intron   783-958      
exon   959-1029      
intron   1030-1154      
exon   1155-1210      
intron   1211-1320      
exon   1321-1372      
intron   1373-1448      
exon   1449-1530      
intron   1531-1630      
exon   1631-2004      
intron   2005-2123      
exon   2124-2633      
intron   2634-2730      
exon   2731-3109      
3' utr   2959-3109      
Polymorphism (?)
Showing 15 of 56 entries
(see all)		  
name (?)   type (?)   Polymorphism site   Allele type (?)
AT_3.8093   insertion   coding_region   unknown
ELF5_1597   substitution   intron   unknown
ELF5_1597   substitution   intron   unknown
ELF5_1789   substitution   intron   unknown
ELF5_1789   substitution   intron   unknown
ELF5_2695   substitution   exon   unknown
ELF5_2695   substitution   coding_region   unknown
ELF5_3032   substitution   intron   unknown
ELF5_3032   substitution   intron   unknown
ELF5_3209   substitution   exon   unknown
ELF5_3209   substitution   coding_region   unknown
GABI_011F12   insertion   5'UTR   unknown
GABI_011F12   insertion   coding_region   unknown
GABI_417D05   insertion   coding_region   unknown
GABI_417D05   insertion   3'UTR   unknown
Germplasm
(?)
Showing 11 of 11 entries
  
Name   Polymorphisms   Background   Stock Name
SALK_013050   SALK_013050     SALK_013050
Images
None available  
Phenotypes (?)
None available
SALK_025959   SALK_025959.37.90.x     SALK_025959
Images
None available  
Phenotypes (?)
None available
SALK_025959C   SALK_025959.37.90.x     SALK_025959C
Images
None available  
Phenotypes (?)
None available
SALK_040340   SALK_040340     SALK_040340
Images
None available  
Phenotypes (?)
None available
SALK_040342   SALK_040342.24.35.x     SALK_040342
Images
None available  
Phenotypes (?)
None available
SALK_040343   SALK_040343.48.30.x     SALK_040343
Images
None available  
Phenotypes (?)
None available
SALK_040351   SALK_040351     SALK_040351
Images
None available  
Phenotypes (?)
None available
SALK_040556   SALKseq_040556.2; SALK_040556     SALK_040556
Images
None available  
Phenotypes (?)
None available
SALK_040582   SALK_040582.20.30.x     SALK_040582
Images
None available  
Phenotypes (?)
None available
WISCDSLOX499D06   WiscDsLox499D06   Col   CS858820
Images
None available  
Phenotypes (?)
None available
WISCDSLOX499G10   WiscDsLox499G10; WiscDsLox499G10.0; WiscDsLox499G10.1     CS858844
Images
None available  
Phenotypes (?)
None available
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Community Comments (?) (shows only the most recent comments by default)
 
     
Update History (?)  
AT5G62640.3 added on 2009-04-27
Date last modified (?)    2018-11-02
TAIR Accession (?)    Gene:5019474578

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