Gene Model: AT5G57030.1 [Help]
Name (?)    AT5G57030.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclase
Chromosome   5
Locus (?)    AT5G57030 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
LUT2     LUTEIN DEFICIENT 2    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   chloroplast
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2001-01-30 00:00:00.0 NM_125085  full length CDS
genomic   full length cDNA
genomic   full length genomic
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT5G57030.1    524    58490.6    5.6413    Lycopene cyclase-type, FAD-binding:IPR008671(1)
                Lycopene cyclase, beta/epsilon:IPR010108(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
5 AGI nuc_sequence 23077265 - 23080053 bp forward   details
5 MHM17 assembly_unit 61736 - 64524 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   134-2554      
5' utr   1-133      
coding_region   134-427      
coding_region   516-687      
coding_region   769-904      
coding_region   1011-1121      
coding_region   1190-1292      
coding_region   1380-1523      
coding_region   1606-1713      
coding_region   1789-1885      
coding_region   1977-2087      
coding_region   2178-2310      
coding_region   2389-2554      
exon   1-427      
intron   428-515      
exon   516-687      
intron   688-768      
exon   769-904      
intron   905-1010      
exon   1011-1121      
intron   1122-1189      
exon   1190-1292      
intron   1293-1379      
exon   1380-1523      
intron   1524-1605      
exon   1606-1713      
intron   1714-1788      
exon   1789-1885      
intron   1886-1976      
exon   1977-2087      
intron   2088-2177      
exon   2178-2310      
intron   2311-2388      
exon   2389-2789      
3' utr   2555-2789      
Polymorphism (?)
Showing 15 of 29 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
GK-082G09-011867   insertion   exon   unknown
GK-082G09-011867   insertion   promoter   unknown
GK-637A10-022272   insertion   exon   unknown
lut2-1   unknown   unknown   unknown
ossowski_1047459   substitution   promoter   unknown
ossowski_1047462   substitution   5'UTR   unknown
ossowski_1047466   substitution   3'UTR   unknown
ossowski_1047467   substitution   3'UTR   unknown
PERL1096800   substitution   promoter   unknown
PERL1096801   substitution   promoter   unknown
PERL1096803   substitution   exon   unknown
PERL1096806   substitution   exon   unknown
PERL1096807   substitution   intron   unknown
PERL1096809   substitution   intron   unknown
PERL1096810   substitution   exon   unknown
Germplasm
(?)
Showing 15 of 16 entries
(see all)
 
Name   Polymorphisms   Background   Stock Name   Select
chy1 chy2 lut2   SALK_005018.54.65.x     not an ABRC stock  
Images
None available  
Phenotypes (?)

CS378075   GK-082G09-011866; GK-082G09-011867     CS378075   not available
Images
None available  
Phenotypes (?)
None available
lut2-1 bps1-2   lut2-1; BPS1-2     not an ABRC stock  
Images
None available  
Phenotypes (?)

npq1npq4lut2   npq4-1; lut2-1; npq1-2     not an ABRC stock  
Images
None available  
Phenotypes (?)
None available
SALK_005018   SALK_005018     SALK_005018  
Images
None available  
Phenotypes (?)
None available
SALK_014378   SALK_014378     SALK_014378  
Images
None available  
Phenotypes (?)
None available
SALK_014378C   SALK_014378     SALK_014378C  
Images
None available  
Phenotypes (?)
None available
SALK_014815   SALK_014815.24.15.x     SALK_014815  
Images
None available  
Phenotypes (?)
None available
SALK_019364   SALK_019364.56.00.x     SALK_019364  
Images
None available  
Phenotypes (?)
None available
SALK_019364C   SALK_019364.56.00.x     SALK_019364C  
Images
None available  
Phenotypes (?)
None available
SALK_053564   SALK_053564.46.45.x     SALK_053564  
Images
None available  
Phenotypes (?)
None available
SALK_053586   SALK_053586.37.30.n     SALK_053586  
Images
None available  
Phenotypes (?)
None available
SALK_053610   SALKseq_053610.2; SALK_053610.53.75.x; SALKseq_053610.1     SALK_053610  
Images
None available  
Phenotypes (?)
None available
SALK_068903   SALK_068903.20.25.x; SALKseq_068903.1; SALKseq_068903.3     SALK_068903  
Images
None available  
Phenotypes (?)
None available
SALK_138553   SALK_138553.25.65.x; SALKseq_138553.0     SALK_138553  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   ; supported by cDNA: gi 14532799 gb AY040024.1   2002-05-03
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
*Yinghong Pan, Matthew E Hudson, Todd P Michael, and Mary A Schuler
Cytochrome P450s as reporters for circadian-regulated pathways
    19TH INTERNATIONAL CONFERENCE ON ARABIDOPSIS RESEARCH     2008
Merchant SS, Prochnik SE, Vallon O, Harris EH, Karpowicz SJ, Witman GB, Terry A, Salamov A, Fritz-Laylin LK, Marechal-Drouard L, Marshall WF, Qu LH, Nelson DR, Sanderfoot AA, Spalding MH, Kapitonov VV, Ren Q, Ferris P, Lindquist E, Shapiro H, Lucas SM, Grimwood J, Schmutz J, Cardol P, Cerutti H, Chanfreau G, Chen CL, Cognat V, Croft MT, Dent R, Dutcher S, Fernandez E, Fukuzawa H, Gonzalez-Ballester D, Gonzalez-Halphen D, Hallmann A, Hanikenne M, Hippler M, Inwood W, Jabbari K, Kalanon M, Kuras R, Lefebvre PA, Lemaire SD, Lobanov AV, Lohr M, Manuell A, Meier I, Mets L, Mittag M, Mittelmeier T, Moroney JV, Moseley J, Napoli C, Nedelcu AM, Niyogi K, Novoselov SV, Paulsen IT, Pazour G, Purton S, Ral JP, Riano-Pachon DM, Riekhof W, Rymarquis L, Schroda M, Stern D, Umen J, Willows R, Wilson N, Zimmer SL, Allmer J, Balk J, Bisova K, Chen CJ, Elias M, Gendler K, Hauser C, Lamb MR, Ledford H, Long JC, Minagawa J, Page MD, Pan J, Pootakham W, Roje S, Rose A, Stahlberg E, Terauchi AM, Yang P, Ball S, Bowler C, Dieckmann CL, Gladyshev VN, Green P, Jorgensen R, Mayfield S, Mueller-Roeber B, Rajamani S, Sayre RT, Brokstein P, Dubchak I, Goodstein D, Hornick L, Huang YW, Jhaveri J, Luo Y, Martinez D, Ngau WC, Otillar B, Poliakov A, Porter A, Szajkowski L, Werner G, Zhou K, Grigoriev IV, Rokhsar DS, Grossman AR
The Chlamydomonas genome reveals the evolution of key animal and plant functions.
    SCIENCE     2007
Cunningham FX, J r,Pogson, B,Sun, Z,McDonald, K A,DellaPenna, D,Gantt, E
Functional analysis of the beta and epsilon lycopene cyclase enzymes of Arabidopsis reveals a mechanism for control of cyclic carotenoid formation.
    THE PLANT CELL     1996
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2164589

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