Gene Model: AT5G46370.1 [Help]
Name (?)    AT5G46370.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Encodes AtTPK2 (KCO2), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK2 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.
Chromosome   5
Locus (?)    AT5G46370 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
KCO2     CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2    
ATTPK2     TANDEM PORE K+ CHANNEL 2    
ATKCO2     CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   nucleus
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2001-01-30 00:00:00.0 NM_124007  full length CDS
genomic   full length cDNA
genomic   full length genomic
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT5G46370.1    443    49325.6    8.4259    Potassium channel, two pore:IPR003280(2)
                EF-Hand 1, calcium-binding site:IPR018247(1)
                Ion transport 2:IPR013099(2)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
5 AGI nuc_sequence 18809576 - 18811772 bp reverse   details
5 MPL12 assembly_unit 68603 - 70799 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   53-2150      
5' utr   1-52      
coding_region   53-1209      
coding_region   1976-2150      
exon   1-1209      
intron   1210-1975      
exon   1976-2197      
3' utr   2151-2197      
Polymorphism (?)
Showing 14 of 14 entries
 
name (?)   type (?)   Polymorphism site   Allele type (?)
GK-509E06-019519   insertion   exon   unknown
GK-787G12-024931   insertion   exon   unknown
ossowski_1010449   substitution   promoter   unknown
PERL1057629   substitution   exon   unknown
PERL1057630   substitution   exon   unknown
PERL1057632   substitution   exon   unknown
SALK_007975.55.25.x   insertion   intron   unknown
SALK_096547   insertion   promoter   unknown
SALK_096547.48.35.x   insertion   promoter   unknown
SALK_114363.40.85.x   insertion   intron   unknown
SGCSNP14778   substitution   intron   unknown
SGCSNP14778   substitution   intron   unknown
SGCSNP14779   substitution   intron   unknown
SGCSNP14779   substitution   intron   unknown
Germplasm
(?)
Showing 8 of 8 entries
 
Name   Polymorphisms   Background   Stock Name   Select
CS353021   GK-509E06-019519     CS353021  
Images
None available  
Phenotypes (?)
None available
CS353081   GK-787G12-024931     CS353081  
Images
None available  
Phenotypes (?)
None available
CS448822   GK-509E06-019519     CS448822  
Images
None available  
Phenotypes (?)
None available
SALK_007975   SALK_007975.55.25.x     SALK_007975  
Images
None available  
Phenotypes (?)
None available
SALK_007975C   SALK_007975.55.25.x     SALK_007975C  
Images
None available  
Phenotypes (?)
None available
SALK_096547   SALK_096547     SALK_096547  
Images
None available  
Phenotypes (?)
None available
SALK_096547C   SALK_096547     SALK_096547C  
Images
None available  
Phenotypes (?)
None available
SALK_114363   SALK_114363.40.85.x     SALK_114363  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
*Town, Chris Redman, Julia Zhuang, Jun Monaghan, Erin Wang, Wei Moskal, William Wu, Hank Quan, Hui Underwood, Beverly Xiao, Yongli
Understanding the function of unknown genes in Arabidopsis by quantitative real time PCR expression profiling and promoter-reporter expression analysis in transgenic plants
    19TH INTERNATIONAL CONFERENCE ON ARABIDOPSIS RESEARCH     2008
Voelker, Camilla, Schmidt, Diana, Mueller-Roeber, Bernd, Czempinski, Katrin
Members of the Arabidopsis AtTPK/KCO family form homomeric vacuolar channels in planta.
    THE PLANT JOURNAL     2006
Czempinski, K,Zimmermann, S,Ehrhardt, T,Muller-Rober, B
New structure and function in plant K+ channels: KCO1, an outward rectifier with a steep Ca2+ dependency.
    THE EMBO JOURNAL     1997
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2170422

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