Gene Model: AT5G45470.1 [Help]
Name (?)    AT5G45470.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    transmembrane protein, putative (DUF594);(source:Araport11)
Chromosome   5
Locus (?)    AT5G45470 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
Plant structure   expressed in   plant callus
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2001-01-30 00:00:00.0 NM_123915  full length CDS
genomic   full length cDNA
genomic   full length genomic
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT5G45470.1    866    100186.3    9.0846    Protein of unknown function DUF594:IPR007658(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
5 AGI nuc_sequence 18421985 - 18425042 bp reverse   details
5 MFC19 assembly_unit 41391 - 44448 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   279-2879      
5' utr   1-278      
coding_region   279-2879      
exon   1-3058      
3' utr   2880-3058      
Polymorphism (?)
Showing 15 of 66 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
FLAG_276G04   insertion   promoter   unknown
FLAG_530A04   insertion   exon   unknown
FLAG_544A05   insertion   exon   unknown
FLAG_544A06   insertion   exon   unknown
FLAG_544B09   insertion   exon   unknown
GK-230B03-014312   insertion   exon   unknown
GK-230G10-014312   insertion   exon   unknown
GK-346A05-016240   insertion   exon   unknown
GK-775H11-025474   insertion   promoter   unknown
GK-775H11-025478   insertion   promoter   unknown
GT13421.Ds3.03.05.2004.jx56.365   insertion   exon   unknown
GT14438.Ds3.05.23.2004.jx61.609   insertion   intron   unknown
GT14438.Ds3.05.23.2004.jx61.609   insertion   exon   unknown
GT25510.Ds5.04.23.2009.jz60.83   insertion   exon   unknown
ossowski_1005597   substitution   exon   unknown
Germplasm
(?)
Showing 6 of 6 entries
 
Name   Polymorphisms   Background   Stock Name   Select
SAIL_52_D11   SAIL_52_D11.v1     CS802462  
Images
None available  
Phenotypes (?)
None available
SAIL_733_H09   SAIL_733_H09.v1; SAIL_733_H09.v3     not an ABRC stock  
Images
None available  
Phenotypes (?)
None available
SALK_089745   SALK_089745.51.10.x     SALK_089745  
Images
None available  
Phenotypes (?)
None available
SALK_089745C   SALK_089745.51.10.x     SALK_089745C  
Images
None available  
Phenotypes (?)
None available
SALK_147910   SALK_147910.52.75.n     SALK_147910  
Images
None available  
Phenotypes (?)
None available
SALK_147910C   SALK_147910.52.75.n     SALK_147910C  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   similar to unknown protein (pir T04430)   2002-05-03
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
Dunkley, Tom P J, Hester, Svenja, Shadforth, Ian P, Runions, John, Weimar, Thilo, Hanton, Sally L, Griffin, Julian L, Bessant, Conrad, Brandizzi, Federica, Hawes, Chris, Watson, Rod B, Dupree, Paul, Lilley, Kathryn S
Mapping the Arabidopsis organelle proteome.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA     2006
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2163542

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