Gene Model: AT5G41490.1 [Help]
Name (?)    AT5G41490.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    F-box associated ubiquitination effector family protein;(source:Araport11)
Chromosome   5
Locus (?)    AT5G41490 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   cytoplasm
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2001-01-30 00:00:00.0 NM_123513  full length CDS
genomic AGI-TIGR 2001-01-30 00:00:00.0 NM_123513  full length genomic
genomic   full length cDNA
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT5G41490.1    387    45199.9    8.1441    F-box domain, cyclin-like:IPR001810(2)
                F-box associated interaction domain:IPR017451(1)
                F-box domain, Skp2-like:IPR022364(1)
                F-box associated domain, type 1:IPR006527(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
5 AGI nuc_sequence 16600445 - 16601608 bp forward   details
5 MYC6 assembly_unit 81259 - 82422 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   1-1164      
coding_region   1-1164      
exon   1-1164      
Polymorphism (?)
Showing 15 of 35 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
FLAG_049H12   insertion   promoter   unknown
FLAG_399B08   insertion   promoter   unknown
FLAG_408H12   insertion   promoter   unknown
FLAG_415D10   insertion   exon   unknown
FLAG_606C06   insertion   exon   unknown
GK-767A09-024595   insertion   exon   unknown
ossowski_974045   substitution   promoter   unknown
ossowski_974046   substitution   promoter   unknown
ossowski_974047   substitution   promoter   unknown
ossowski_974048   substitution   coding_region   unknown
ossowski_974050   substitution   coding_region   unknown
ossowski_974052   substitution   coding_region   unknown
ossowski_974054   substitution   coding_region   unknown
ossowski_974058   substitution   coding_region   unknown
ossowski_974059   substitution   coding_region   unknown
Germplasm
(?)
Showing 8 of 8 entries
 
Name   Polymorphisms   Background   Stock Name   Select
CS24841   SALK_036053     CS24841  
Images
None available  
Phenotypes (?)
None available
CS24851   SALK_054719.48.00.x     CS24851  
Images
None available  
Phenotypes (?)
None available
SALK_018446   SALK_018446.56.00.x     SALK_018446  
Images
None available  
Phenotypes (?)
None available
SALK_018446C   SALK_018446.56.00.x     SALK_018446C  
Images
None available  
Phenotypes (?)
None available
SALK_036053   SALK_036053     SALK_036053  
Images
None available  
Phenotypes (?)
None available
SALK_036053C   SALK_036053.41.50.x     SALK_036053C  
Images
None available  
Phenotypes (?)
None available
SALK_054719   SALK_054719.48.00.x; SALKseq_054719.0; SALKseq_054719.1     SALK_054719  
Images
None available  
Phenotypes (?)
None available
SALK_054719C   SALK_054719.48.00.x     SALK_054719C   not available
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   strong similarity to unknown protein (gb AAC67359.1)   2002-05-03
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
*Town, Chris Redman, Julia Zhuang, Jun Monaghan, Erin Wang, Wei Moskal, William Wu, Hank Quan, Hui Underwood, Beverly Xiao, Yongli
Understanding the function of unknown genes in Arabidopsis by quantitative real time PCR expression profiling and promoter-reporter expression analysis in transgenic plants
    19TH INTERNATIONAL CONFERENCE ON ARABIDOPSIS RESEARCH     2008
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2177925

printer-friendly version