Gene Model: AT5G39980.1 [Help]
Name (?)    AT5G39980.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
Chromosome   5
Locus (?)    AT5G39980 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   mitochondrion
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2001-01-30 00:00:00.0 NM_123361  full length CDS
genomic   full length cDNA
genomic   full length genomic
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT5G39980.1    678    78272.2    8.3699    Pentatricopeptide repeat:IPR002885(37)
Map Locations
chrom map map type (?) coordinates orientation attrib
5 AGI nuc_sequence 16000712 - 16003072 bp reverse   details
5 MYH19 assembly_unit 53296 - 55656 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   1-2037      
coding_region   1-2037      
exon   1-2361      
3' utr   2038-2361      
Polymorphism (?)
Showing 15 of 28 entries
(see all)
name (?)   type (?)   Polymorphism site   Allele type (?)
GT24922.Ds3.03.04.2009.jz53.640   insertion   exon   unknown
GT24922.Ds5.03.04.2009.jz52.741   insertion   exon   unknown
GT25194.Ds3.03.04.2009.jz56.627   insertion   exon   unknown
ossowski_966640   substitution   5'UTR   unknown
ossowski_966644   substitution   coding_region   unknown
ossowski_966648   substitution   coding_region   unknown
ossowski_966652   substitution   promoter   unknown
ossowski_966654   substitution   promoter   unknown
ossowski_966655   substitution   promoter   unknown
ossowski_966656   substitution   promoter   unknown
ossowski_966657   substitution   promoter   unknown
ossowski_966658   substitution   promoter   unknown
ossowski_966661   substitution   promoter   unknown
ossowski_966664   substitution   promoter   unknown
PERL1011896   substitution   exon   unknown
Showing 4 of 4 entries
Name   Polymorphisms   Background   Stock Name   Select
SAIL_14_A10   SAIL_14_A10.v1     CS800651  
None available  
Phenotypes (?)
None available
SALK_006110   SALK_006110     SALK_006110  
None available  
Phenotypes (?)
None available
SALK_129401   SALK_129401.50.50.x     SALK_129401  
None available  
Phenotypes (?)
None available
SALK_129401C   SALK_129401.50.50.x     SALK_129401C  
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   crp1 protein - Zea mays, PIR:T01685   2002-05-03
Community Comments (?) (shows only the most recent comments by default)
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2178036

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