Gene Model: AT5G14320.1 [Help]
Name (?)    AT5G14320.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Ribosomal protein S13/S18 family;(source:Araport11)
Chromosome   5
Locus (?)    AT5G14320 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
EMB3137     EMBRYO DEFECTIVE 3137    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   chloroplast, chloroplast envelope, chloroplast stroma
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2001-11-17 11:58:00.0 NM_121436  full length CDS
genomic   full length cDNA
genomic   full length genomic
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT5G14320.1    169    19096.4    10.9237    Ribosomal protein S13:IPR001892(4)
                Ribosomal protein S13, conserved site:IPR018269(1)
                Ribosomal protein S13, bacterial-type;Molecular Fu:IPR019980(1)
                Ribosomal protein S13-like, H2TH:IPR010979(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
5 AGI nuc_sequence 4617650 - 4618912 bp reverse   details
5 F18O22 assembly_unit 36399 - 37661 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   141-1074      
5' utr   1-140      
coding_region   141-257      
coding_region   455-679      
coding_region   907-1074      
exon   1-257      
intron   258-454      
exon   455-679      
intron   680-906      
exon   907-1263      
3' utr   1075-1263      
Polymorphism (?)
Showing 12 of 12 entries
 
name (?)   type (?)   Polymorphism site   Allele type (?)
BKN000010183   substitution   coding_region   unknown
BKN000010183   substitution   5'UTR   unknown
ossowski_1167637   insertion   promoter   unknown
ossowski_1167638   insertion   promoter   unknown
ossowski_1216977   deletion   intron   unknown
ossowski_865089   substitution   intron   unknown
ossowski_865090   substitution   promoter   unknown
ossowski_865092   substitution   promoter   unknown
PERL0889362   substitution   exon   unknown
PERL0889362   substitution   3'UTR   unknown
SALK_087496.50.45.x   insertion   promoter   unknown
SALK_133412.54.00.x   insertion   intron   unknown
Germplasm
(?)
Showing 3 of 3 entries
 
Name   Polymorphisms   Background   Stock Name   Select
SALK_087496   SALK_087496.50.45.x; SALKseq_087496.0     SALK_087496  
Images
None available  
Phenotypes (?)
None available
SALK_087496C   SALK_087496.50.45.x     SALK_087496C  
Images
None available  
Phenotypes (?)
None available
SALK_133412   SALK_133412.54.00.x     SALK_133412  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   ribosomal protein S13 precursor, chloroplast Arabidopsis thaliana, PIR:S59594; supported by cDNA: gi 14517396 gb AY039533.1   2002-05-03
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
Zybailov, Boris, Rutschow, Heidi, Friso, Giulia, Rudella, Andrea, Emanuelsson, Olof, Sun, Qi, van Wijk, Klaas J
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.
    PLOS ONE     2008
Kleffmann, T,Russenberger, D,von Zychlinski, A,Christopher, W,Sjolander, K,Gruissem, W,Baginsky, S
The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions.
    CURRENT BIOLOGY     2004
Froehlich, J E,Wilkerson, C G,Ray, W K,McAndrew, R S,Osteryoung, K W,Gage, D A,Phinney, B S
Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis.
    JOURNAL OF PROTEOME RESEARCH     2003
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2145617

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