Gene Model: AT5G08640.1 [Help]
Name (?)    AT5G08640.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols. Co-expressed with CHI and CHS (qRT-PCR).
Chromosome   5
Locus (?)    AT5G08640 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
FLS     FLAVONOL SYNTHASE    
ATFLS1        
FLS1     FLAVONOL SYNTHASE 1    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   cytoplasm
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic   full length cDNA
mRNA Ceres 2002-04-24 00:00:00.0   full length cDNA
genomic AGI-TIGR 2004-03-04 18:34:00.0 NM_120951  full length genomic
genomic AGI-TIGR 2002-09-20 00:00:00.0 NM_120951  full length CDS
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT5G08640.1    336    38281.4    5.7023    Oxoglutarate/iron-dependent oxygenase:IPR005123(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
5 AGI nuc_sequence 2803958 - 2805447 bp forward   details
5 MAH20 assembly_unit 71481 - 72970 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   52-1218      
5' utr   1-51      
coding_region   52-518      
coding_region   590-917      
coding_region   1003-1218      
exon   1-518      
intron   519-589      
exon   590-917      
intron   918-1002      
exon   1003-1490      
3' utr   1219-1490      
Polymorphism (?)
Showing 15 of 86 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
atfls1_131B7   substitution   exon   unknown
atfls1_131B7   substitution   coding_region   unknown
atfls1_131B7   digest_pattern   exon   unknown
atfls1_132E1   substitution   intron   unknown
atfls1_132E1   substitution   exon   unknown
atfls1_132E8   substitution   coding_region   unknown
atfls1_132E8   substitution   exon   unknown
atfls1_132E8   digest_pattern   exon   unknown
atfls1_135G7   digest_pattern   exon   unknown
atfls1_135G7   substitution   coding_region   unknown
atfls1_135G7   substitution   exon   unknown
atfls1_152H3   substitution   coding_region   unknown
atfls1_152H3   digest_pattern   exon   unknown
atfls1_152H3   substitution   exon   unknown
atfls1_157D4   substitution   exon   unknown
Germplasm
(?)
Showing 15 of 20 entries
(see all)
 
Name   Polymorphisms   Background   Stock Name   Select
CS87685   atfls1_200H1     CS87685  
Images
None available  
Phenotypes (?)
None available
CS88092   atfls1_131B7     CS88092  
Images
None available  
Phenotypes (?)
None available
CS88113   atfls1_132E1     CS88113  
Images
None available  
Phenotypes (?)
None available
CS88172   atfls1_132E8     CS88172  
Images
None available  
Phenotypes (?)
None available
CS88378   tt4chs_135G7; atfls1_135G7     CS88378  
Images
None available  
Phenotypes (?)
None available
CS89522   pin4_152H3; sclall_152H3; atfls1_152H3; w40k_152H3     CS89522  
Images
None available  
Phenotypes (?)
None available
CS89879   bpsl2_157D4; atfls1_157D4     CS89879  
Images
None available  
Phenotypes (?)
None available
CS90263   atfls1_161D8     CS90263  
Images
None available  
Phenotypes (?)
None available
CS90278   atfls1_162A2     CS90278  
Images
None available  
Phenotypes (?)
None available
CS90322   cals9_162C7; atfls1_162C7     CS90322  
Images
None available  
Phenotypes (?)
None available
CS93059   atfls1_177D3     CS93059  
Images
None available  
Phenotypes (?)
None available
CS93228   cle44_i179H6; agl18_179H6; atfls1_179H6     CS93228  
Images
None available  
Phenotypes (?)
None available
CS94818   atfls1_203C7     CS94818  
Images
None available  
Phenotypes (?)
None available
CS95179   atfls1_209A3     CS95179  
Images
None available  
Phenotypes (?)
None available
CS95213   ataps1_209A7; atfls1_209A7     CS95213  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   ;supported by full-length cDNA: Ceres:23924.   2002-05-03
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
*Yinghong Pan, Matthew E Hudson, Todd P Michael, and Mary A Schuler
Cytochrome P450s as reporters for circadian-regulated pathways
    19TH INTERNATIONAL CONFERENCE ON ARABIDOPSIS RESEARCH     2008
Stracke, Ralf De Vos, Ric CH Ishihara, Hirofumi Bartelniewoehner, Lutz Sagasser, Martin Martens, Stefan *Weisshaar, Bernd
Metabolomic and genetic analyses of flavonol synthesis in Arabidopsis thaliana
    19TH INTERNATIONAL CONFERENCE ON ARABIDOPSIS RESEARCH     2008
Pelletier, M K,Murrell, J R,Shirley, B W
Characterization of flavonol synthase and leucoanthocyanidin dioxygenase genes in Arabidopsis. Further evidence for differential regulation of 'early' and 'late' genes.
    PLANT PHYSIOLOGY     1997
Update History (?)  
AT5G08640.1 replaces AT5G08640.1 on 2004-02-23
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:3443138

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