Gene Model: AT4G37940.1 [Help]
Name (?)    AT4G37940.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    encodes a MADS box protein, highly expressed in the root.
Chromosome   4
Locus (?)    AT4G37940 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
AGL21     AGAMOUS-LIKE 21    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   nucleus
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2001-01-29 00:00:00.0 NM_119955  full length CDS
genomic   full length genomic
genomic   full length cDNA
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT4G37940.1    228    26410.8    9.3404    Transcription factor, MADS-box:IPR002100(8)
                Transcription factor, K-box:IPR002487(2)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
4 AGI nuc_sequence 17835572 - 17838621 bp reverse   details
4 F20D10 assembly_unit 23590 - 26639 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   1-2927      
coding_region   1-182      
coding_region   1861-1939      
coding_region   2085-2146      
coding_region   2271-2370      
coding_region   2486-2527      
coding_region   2630-2713      
coding_region   2790-2927      
exon   1-182      
intron   183-1860      
exon   1861-1939      
intron   1940-2084      
exon   2085-2146      
intron   2147-2270      
exon   2271-2370      
intron   2371-2485      
exon   2486-2527      
intron   2528-2629      
exon   2630-2713      
intron   2714-2789      
exon   2790-2934      
intron   2935-3029      
exon   3030-3050      
3' utr   2928-2934      
3' utr   3030-3050      
Polymorphism (?)
Showing 15 of 72 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
CU458456   insertion   intron   unknown
CU458457   insertion   intron   unknown
GK-157C08-013241   insertion   intron   unknown
GK-775F09-025478   insertion   intron   unknown
ossowski_1165843   insertion   intron   unknown
ossowski_1215050   deletion   intron   unknown
ossowski_1215051   deletion   intron   unknown
ossowski_1215052   deletion   intron   unknown
ossowski_1215053   deletion   intron   unknown
ossowski_832479   substitution   intron   unknown
ossowski_832480   substitution   intron   unknown
ossowski_832481   substitution   intron   unknown
ossowski_832482   substitution   intron   unknown
ossowski_832483   substitution   intron   unknown
ossowski_832484   substitution   coding_region   unknown
Germplasm
(?)
Showing 3 of 3 entries
 
Name   Polymorphisms   Background   Stock Name   Select
CS301445   GK-157C08-013241     CS301445  
Images
None available  
Phenotypes (?)
None available
CS415008   GK-157C08-013241     CS415008  
Images
None available  
Phenotypes (?)
None available
CS474373   GK-775F09-025478     CS474373  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   MADS-box protein AGL17 - Arabidopsis thaliana, PID:g862648   2002-05-03
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
Lee, Ji-Young, Colinas, Juliette, Wang, Jean Y, Mace, Daniel, Ohler, Uwe, Benfey, Philip N
Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA     2006
de Folter S, Immink RG, Kieffer M, Parenicova L, Henz SR, Weigel D, Busscher M, Kooiker M, Colombo L, Kater MM, Davies B, Angenent GC
Comprehensive Interaction Map of the Arabidopsis MADS Box Transcription Factors.
    THE PLANT CELL     2005
Duarte, Jill M, Cui, Liying, Wall, P Kerr, Zhang, Qing, Zhang, Xiaohong, Leebens-Mack, Jim, Ma, Hong, Altman, Naomi, Depamphilis, Claude W
Expression Pattern Shifts Following Duplication Indicative of Subfunctionalization and Neofunctionalization in Regulatory Genes of Arabidopsis.
    MOLECULAR BIOLOGY AND EVOLUTION     2005
Riechmann, J L,Heard, J,Martin, G,Reuber, L,Jiang, C,Keddie, J,Adam, L,Pineda, O,Ratcliffe, O J,Samaha, R R,Creelman, R,Pilgrim, M,Broun, P,Zhang, J Z,Ghandehari, D,Sherman, B K,Yu, G
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    SCIENCE     2000
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2121069

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