Gene Model: AT4G20940.1 [Help]
Name (?)    AT4G20940.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Encodes a plasma-membrane localized LRR receptor-like protein involved in both ABA and H202 mediated signaling involved in stomatal movement. TAIR10 annotation for this gene has a low confidence score (2-star). See Comments field for structural annotation by the community.
Chromosome   4
Locus (?)    AT4G20940 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
GHR1     GUARD CELL HYDROGEN PEROXIDE-RESISTANT 1    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   plasma membrane
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2004-03-04 18:34:00.0 NM_118212  full length CDS
genomic AGI-TIGR 2004-03-04 18:34:00.0 NM_118212  full length genomic
genomic   full length cDNA
protein
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT4G20940.1    977    105110.1    5.6726    Protein kinase-like domain:IPR011009(1)
                Leucine-rich repeat-containing N-terminal, type 2:IPR013210(1)
                Tyrosine-protein kinase, catalytic domain:IPR020635(1)
                Protein kinase, catalytic domain:IPR000719(1)
                Toll-like receptor, leucine rich repeat-containing:IPR020474(2)
                Leucine-rich repeat:IPR001611(11)
                Serine/threonine-protein kinase domain:IPR002290(1)
                Serine-threonine/tyrosine-protein kinase:IPR001245(1)
                Leucine-rich repeat, typical subtype:IPR003591(8)
AT4G20940    1037    112042.0       
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
4 AGI nuc_sequence 11202728 - 11206280 bp forward   details
4 T13K14 assembly_unit 41827 - 45379 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   1-3311      
coding_region   1-1000      
coding_region   1112-2555      
coding_region   2822-3311      
exon   1-1000      
intron   1001-1111      
exon   1112-2555      
intron   2556-2821      
exon   2822-3553      
3' utr   3312-3553      
Polymorphism (?)
Showing 15 of 19 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
ET8383.Ds3.05.20.01.JU95.b.450   insertion   exon   unknown
GK-516C06-019946   insertion   exon   unknown
GK-516C06-019970   insertion   exon   unknown
GK-760C07-024594   insertion   exon   unknown
GK-760C07-024639   insertion   exon   unknown
GT14659.Ds3.10.08.2004.jx91.630   insertion   promoter   unknown
GT14659.Ds5.10.08.2004.jx91.524   insertion   promoter   unknown
GT9416.Ds3.04.27.01.JU92.b.423   insertion   exon   unknown
ossowski_788995   substitution   promoter   unknown
ossowski_788996   substitution   promoter   unknown
ossowski_788997   substitution   coding_region   unknown
PERL0798021   substitution   exon   unknown
PERL0798024   substitution   exon   unknown
SALK_031493   insertion   exon   unknown
SALK_031493.52.35.x   insertion   exon   unknown
Germplasm
(?)
Showing 7 of 7 entries
 
Name   Polymorphisms   Background   Stock Name   Select
CS449470   GK-516C06-019970     CS449470  
Images
None available  
Phenotypes (?)
None available
CS472895   GK-760C07-024639     CS472895  
Images
None available  
Phenotypes (?)
None available
SALK_031493   SALKseq_031493.0; SALK_031493     SALK_031493  
Images
None available  
Phenotypes (?)
None available
SALK_031493C   SALK_031493     SALK_031493C  
Images
None available  
Phenotypes (?)
None available
SALK_033702   SALK_033702; SALKseq_033702.2; SALKseq_033702.0; SALKseq_033702.1     SALK_033702  
Images
None available  
Phenotypes (?)
None available
SALK_033702C   SALK_033702     SALK_033702C  
Images
None available  
Phenotypes (?)
None available
WiscDsLox387F09   WiscDsLox387F09; WiscDsLox387F09.0     CS853950  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   receptor kinase-like protein gene, Oryza longistaminata, gb:U72725   2002-05-03
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
Benschop, Joris J, Mohammed, Shabaz, O'flaherty, Martina, Heck, Albert J R, Slijper, Monique, Menke, Frank L H
Quantitative phospho-proteomics of early elicitor signalling in Arabidopsis.
    MOLECULAR & CELLULAR PROTEOMICS : MCP.     2007
Boisson, B,Giglione, C,Meinnel, T
Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote.
    JOURNAL OF BIOLOGICAL CHEMISTRY     2003
Kobe,B,Kajava,AV
The leucine-rich repeat as a protein recognition motif.
    CURRENT OPINION IN STRUCTURAL BIOLOGY     2001
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2133048

printer-friendly version