Gene Model: AT4G11320.1 [Help]
Name (?)    AT4G11320.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Papain family cysteine protease;(source:Araport11)
Chromosome   4
Locus (?)    AT4G11320 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
CP2     CYSTEINE PROTEASE 2    
ATCP2        
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   extracellular region
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
mRNA Ceres 2002-04-24 00:00:00.0   full length cDNA
genomic AGI-TIGR 2001-01-29 00:00:00.0 NM_117203  full length CDS
genomic AGI-TIGR 2004-03-04 18:34:00.0 NM_117203  full length genomic
genomic   full length cDNA
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT4G11320.1    371    40710.5    5.6606    Peptidase, cysteine peptidase active site:IPR000169(1)
                Proteinase inhibitor I29, cathepsin propeptide:IPR013201(2)
                Peptidase C1A, papain C-terminal:IPR000668(5)
                Peptidase C1A, papain:IPR013128(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
4 AGI nuc_sequence 6887254 - 6889059 bp forward   details
4 F8L21 assembly_unit 58486 - 60291 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   83-1574      
5' utr   1-82      
coding_region   83-578      
coding_region   718-953      
coding_region   1095-1235      
coding_region   1332-1574      
exon   1-578      
intron   579-717      
exon   718-953      
intron   954-1094      
exon   1095-1235      
intron   1236-1331      
exon   1332-1806      
3' utr   1575-1806      
Polymorphism (?)
Showing 15 of 39 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
AMU-4-168   deletion   unknown   unknown
AMU-4-168   deletion   unknown   unknown
FLAG_429E02   insertion   exon   unknown
FLAG_429H02   insertion   intron   unknown
FLAG_501C03   insertion   exon   unknown
GK-060B02-027915   insertion   promoter   unknown
GK-060B02-028726   insertion   promoter   unknown
GK-060B02-028830   insertion   promoter   unknown
ossowski_1209640   deletion   promoter   unknown
ossowski_733392   substitution   promoter   unknown
ossowski_733393   substitution   promoter   unknown
ossowski_733394   substitution   promoter   unknown
ossowski_733395   substitution   intron   unknown
ossowski_733396   substitution   intron   unknown
ossowski_733397   substitution   intron   unknown
Germplasm
(?)
Showing 2 of 2 entries
 
Name   Polymorphisms   Background   Stock Name   Select
SALK_057171   SALK_057171     SALK_057171  
Images
None available  
Phenotypes (?)
None available
SALK_057171C   SALK_057171     SALK_057171C  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   contains similarity to cysteine proteinase RD21A (thiol protease) GI:435619, SP:P43297 from (Arabidopsis thaliana);supported by full-length cDNA: Ceres:6307.   2002-05-03
Community Comments (?) (shows only the most recent comments by default)
 
     
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2128252

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