Gene Model: AT4G02610.1 [Help]
Name (?)    AT4G02610.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Aldolase-type TIM barrel family protein;(source:Araport11)
Chromosome   4
Locus (?)    AT4G02610 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   chloroplast
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2000-08-14 00:00:00.0 NM_116495  full length CDS
genomic   full length genomic
genomic   full length cDNA
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT4G02610.1    275    29578.9    5.8197    Tryptophan synthase, alpha chain:IPR002028(2)
                Tryptophan synthase, alpha chain, active site:IPR018204(1)
                Ribulose-phosphate binding barrel:IPR011060(1)
                Aldolase-type TIM barrel:IPR013785(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
4 AGI nuc_sequence 1147634 - 1149336 bp forward   details
4 T10P11 assembly_unit 50107 - 51809 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   29-1584      
5' utr   1-28      
coding_region   29-103      
coding_region   201-347      
coding_region   418-483      
coding_region   637-745      
coding_region   879-955      
coding_region   1050-1127      
coding_region   1226-1363      
coding_region   1447-1584      
exon   1-103      
intron   104-200      
exon   201-347      
intron   348-417      
exon   418-483      
intron   484-636      
exon   637-745      
intron   746-878      
exon   879-955      
intron   956-1049      
exon   1050-1127      
intron   1128-1225      
exon   1226-1363      
intron   1364-1446      
exon   1447-1703      
3' utr   1585-1703      
Polymorphism (?)
Showing 15 of 27 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
ET14110.Ds3.10.08.2004.jx88.772   insertion   exon   unknown
ET14110.Ds5.10.08.2004.jx88.637   insertion   exon   unknown
GK-321G06-015949   insertion   exon   unknown
GK-321G06-015949   insertion   promoter   unknown
GK-537G03-020491   insertion   intron   unknown
GK-537G03-020492   insertion   intron   unknown
GK-598F10-021211   insertion   intron   unknown
GK-598F10-023731   insertion   exon   unknown
GK-598F10-023805   insertion   intron   unknown
GT21483.Ds5.09.01.2006.jz11.597   insertion   promoter   unknown
ossowski_667379   substitution   coding_region   unknown
ossowski_667380   substitution   coding_region   unknown
PERL0669381   substitution   promoter   unknown
PERL0669384   substitution   exon   unknown
PERL0669389   substitution   exon   unknown
Germplasm
(?)
Showing 10 of 10 entries
 
Name   Polymorphisms   Background   Stock Name   Select
SALK_026326   SALK_026326.27.60.x     SALK_026326  
Images
None available  
Phenotypes (?)
None available
SALK_026327   SALK_026327.37.25.x     SALK_026327  
Images
None available  
Phenotypes (?)
None available
SALK_026332   SALK_026332.43.10.x     SALK_026332  
Images
None available  
Phenotypes (?)
None available
SALK_027406   SALK_027406.30.40.x     SALK_027406  
Images
None available  
Phenotypes (?)
None available
SALK_027411   SALK_027411.30.40.x     SALK_027411  
Images
None available  
Phenotypes (?)
None available
SALK_089774   SALK_089774; SALKseq_089774.0     SALK_089774  
Images
None available  
Phenotypes (?)
None available
SALK_125915   SALK_125915.17.75.x     SALK_125915  
Images
None available  
Phenotypes (?)
None available
SALK_125916   SALK_125916.19.00.x     SALK_125916  
Images
None available  
Phenotypes (?)
None available
SALK_138654   SALK_138654.49.70.x; SALKseq_138654.0     SALK_138654  
Images
None available  
Phenotypes (?)
None available
SALK_138654C   SALK_138654.49.70.x     SALK_138654C  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   similar to A. thaliana tryptophan synthase alpha chain (EC 4.2.1.20), GenBank accession number U18993   2002-05-03
Community Comments (?) (shows only the most recent comments by default)
Robert Last , 04/20/2005
Point mutations at this locus are described in: Mol. Gen. Genet. (1996) 253:353-361.
     
Publication (?)   
author/title     source     date
Radwanski, E R,Zhao, J,Last, R L
Arabidopsis thaliana tryptophan synthase alpha: gene cloning, expression, and subunit interaction.
    MOLECULAR AND GENERAL GENETICS     1995
Zhao, J,Last, R L
Immunological characterization and chloroplast localization of the tryptophan biosynthetic enzymes of the flowering plant Arabidopsis thaliana.
    JOURNAL OF BIOLOGICAL CHEMISTRY     1995
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2132327

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