Gene Model: AT4G02350.1 [Help]
Name (?)    AT4G02350.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. The mRNA is cell-to-cell mobile.
Chromosome   4
Locus (?)    AT4G02350 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
SEC15B     EXOCYST COMPLEX COMPONENT SEC15B    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   membrane, plasma membrane, plasmodesma
  not located in   cytosol
Plant structure   expressed in   cultured plant cell, vascular leaf
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2004-03-04 18:34:00.0 NM_116468  full length genomic
genomic   full length CDS
genomic   full length cDNA
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT4G02350.1    787    88370.1    6.3947    Exocyst complex subunit Sec15-like:IPR007225(3)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
4 AGI nuc_sequence 1038114 - 1040774 bp forward   details
4 T14P8 assembly_unit 21687 - 24347 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   44-2458      
5' utr   1-43      
coding_region   44-1027      
coding_region   1079-2458      
exon   1-1027      
intron   1028-1078      
exon   1079-2661      
3' utr   2459-2661      
Polymorphism (?)
Showing 15 of 65 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
GK-831E07-025746   insertion   promoter   unknown
GT11396.Ds5.07.24.2002.jw46.438   insertion   exon   unknown
GT11396.Ds5.07.24.2002.jw46.438   insertion   promoter   unknown
MASC01943   substitution   coding_region   unknown
MASC01944   substitution   coding_region   unknown
MASC01945   substitution   coding_region   unknown
MASC01946   substitution   coding_region   unknown
MASC01947   substitution   coding_region   unknown
MASC01948   substitution   coding_region   unknown
MASC08274   substitution   coding_region   unknown
ossowski_666255   substitution   promoter   unknown
ossowski_666256   substitution   promoter   unknown
ossowski_666258   substitution   promoter   unknown
ossowski_666259   substitution   promoter   unknown
ossowski_666260   substitution   coding_region   unknown
Germplasm
(?)
Showing 11 of 11 entries
 
Name   Polymorphisms   Background   Stock Name   Select
SALK_007664   SALK_007664     SALK_007664  
Images
None available  
Phenotypes (?)
None available
SALK_042723   SALK_042723     SALK_042723  
Images
None available  
Phenotypes (?)
None available
SALK_042800   SALK_042800.49.40.x     SALK_042800  
Images
None available  
Phenotypes (?)
None available
SALK_042800C   SALK_042800.49.40.x     SALK_042800C  
Images
None available  
Phenotypes (?)
None available
SALK_077317   SALK_077317.25.90.x     SALK_077317  
Images
None available  
Phenotypes (?)
None available
SALK_077397   SALKseq_077397.0; SALK_077397.45.50.x     SALK_077397  
Images
None available  
Phenotypes (?)
None available
SALK_077399   SALK_077399.44.85.x     SALK_077399  
Images
None available  
Phenotypes (?)
None available
SALK_130663   SALKseq_130663.1; SALK_130663.44.30.x; SALKseq_130663.2     SALK_130663  
Images
None available  
Phenotypes (?)
None available
SALK_130669   SALKseq_130669.2; SALKseq_130669.1; SALK_130669.23.40.x     SALK_130669  
Images
None available  
Phenotypes (?)
None available
SALK_130669C   SALK_130669.23.40.x     SALK_130669C  
Images
None available  
Phenotypes (?)
None available
SALK_150646   SALK_150646.37.90.x     SALK_150646  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
Ito, J, Batth, T S, Petzold, C J, Redding-Johanson, A M, Mukhopadhyay, A, Verboom, R, Meyer, E H, Millar, A H, Heazlewood, J L
Analysis of the Arabidopsis Cytosolic Proteome Highlights Subcellular Partitioning of Central Plant Metabolism
    JOURNAL OF PROTEOME RESEARCH     2010
Hála, Michal, Cole, Rex, Synek, Lukas, Drdová, Edita, Pecenkova, Tamara, Nordheim, Alfred, Lamkemeyer, Tobias, Madlung, Johannes, Hochholdinger, Frank, Fowler, John E, Zarsky, Viktor
An Exocyst Complex Functions in Plant Cell Growth in Arabidopsis and Tobacco.
    THE PLANT CELL     2008
Marmagne, Anne, Ferro, Myriam, Meinnel, Thierry, Bruley, Christophe, Kuhn, Lauriane, Garin, Jerôme, Barbier-Brygoo, Hélène, Ephritikhine, Geneviève
A high content in lipid-modified peripheral proteins and integral receptor kinases features the Arabidopsis plasma membrane proteome.
    MOLECULAR & CELLULAR PROTEOMICS : MCP.     2007
Mitra, Srijeet, Gantt, John, Ruby, James, Clouse, Steven, Goshe, Michael
Membrane Proteomic Analysis of Arabidopsis thaliana Using Alternative Solubilization Techniques.
    JOURNAL OF PROTEOME RESEARCH     2007
Benschop, Joris J, Mohammed, Shabaz, O'flaherty, Martina, Heck, Albert J R, Slijper, Monique, Menke, Frank L H
Quantitative phospho-proteomics of early elicitor signalling in Arabidopsis.
    MOLECULAR & CELLULAR PROTEOMICS : MCP.     2007
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2133243

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