Gene Model: AT3G62290.1 [Help]
Name (?)    AT3G62290.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. The mRNA is cell-to-cell mobile.
Chromosome   3
Locus (?)    AT3G62290 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
ATARFA1E     ADP-RIBOSYLATION FACTOR A1E    
ARFA1E     ADP-RIBOSYLATION FACTOR A1E    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   vacuole, plasmodesma, Golgi apparatus
  not located in   cytosol
Plant structure   expressed in   cultured plant cell
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
mRNA Ceres 2002-04-24 00:00:00.0   full length cDNA
genomic AGI-TIGR 2000-09-08 00:00:00.0 NM_116094  full length CDS
genomic   full length cDNA
genomic   full length genomic
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT3G62290.1    181    20607.5    6.96    Small GTPase superfamily, ARF/SAR type:IPR006689(6)
                Small GTPase superfamily, ARF type:IPR024156(2)
                Small GTPase superfamily, SAR1-type:IPR006687(1)
                Small GTPase superfamily, Rab type:IPR003579(1)
                Small GTP-binding protein domain:IPR005225(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
3 AGI nuc_sequence 23051650 - 23053757 bp forward   details
3 T17J13 assembly_unit 79295 - 81402 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   638-1896      
5' utr   1-100      
5' utr   629-637      
coding_region   638-785      
coding_region   1096-1166      
coding_region   1304-1423      
coding_region   1508-1626      
coding_region   1726-1807      
coding_region   1891-1896      
exon   1-100      
intron   101-628      
exon   629-785      
intron   786-1095      
exon   1096-1166      
intron   1167-1303      
exon   1304-1423      
intron   1424-1507      
exon   1508-1626      
intron   1627-1725      
exon   1726-1807      
intron   1808-1890      
exon   1891-2108      
3' utr   1897-2108      
Polymorphism (?)
Showing 15 of 34 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
GK-075G09-011890   insertion   unknown   unknown
GK-075G09-011890   insertion   promoter   unknown
GK-075G09-011890   insertion   exon   unknown
GK-136E05-012754   insertion   promoter   unknown
GK-136E05-012754   insertion   exon   unknown
GK-332H12-016064   insertion   exon   unknown
GK-385G12-018248   insertion   promoter   unknown
GK-385G12-018248   insertion   exon   unknown
GK-561C10-021663   insertion   exon   unknown
GK-561C10-021663   insertion   promoter   unknown
GK-561C10-021688   insertion   exon   unknown
GK-561C10-021688   insertion   promoter   unknown
GK-642A03-023222   insertion   promoter   unknown
GK-642A03-023222   insertion   exon   unknown
GK-835H10-025700   insertion   exon   unknown
Germplasm
(?)
Showing 12 of 12 entries
 
Name   Polymorphisms   Background   Stock Name   Select
CS328303   GK-385G12-018248     CS328303  
Images
None available  
Phenotypes (?)
None available
CS344783   GK-835H10-025719; GK-835H10-025700     CS344783  
Images
None available  
Phenotypes (?)
None available
CS436948   GK-385G12-018248     CS436948  
Images
None available  
Phenotypes (?)
None available
CS480158   GK-835H10-025700     CS480158  
Images
None available  
Phenotypes (?)
None available
SALK_054926   SALK_054926.51.85.x; SALKseq_054926.1     SALK_054926  
Images
None available  
Phenotypes (?)
None available
SALK_055118   SALKseq_055118.2; SALKseq_055118.1; SALK_055118.29.70.x     SALK_055118  
Images
None available  
Phenotypes (?)
None available
SALK_110728   SALK_110728.19.05.x; SALKseq_110728.2; SALKseq_110728.1     SALK_110728  
Images
None available  
Phenotypes (?)
None available
SALK_110728C   SALK_110728.19.05.x     SALK_110728C  
Images
None available  
Phenotypes (?)
None available
SALK_128880   SALK_128880.30.50.x     SALK_128880  
Images
None available  
Phenotypes (?)
None available
SALK_128880C   SALK_128880.30.50.x     SALK_128880C  
Images
None available  
Phenotypes (?)
None available
SALK_130670   SALKseq_130670.1; SALK_130670.54.50.x     SALK_130670  
Images
None available  
Phenotypes (?)
None available
SALK_130670C   SALK_130670.54.50.x     SALK_130670C  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   ADP-ribosylation factor 1 - Arabidopsis thaliana, PIR:S28875;supported by full-length cDNA: Ceres:14909.   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
Ito, J, Batth, T S, Petzold, C J, Redding-Johanson, A M, Mukhopadhyay, A, Verboom, R, Meyer, E H, Millar, A H, Heazlewood, J L
Analysis of the Arabidopsis Cytosolic Proteome Highlights Subcellular Partitioning of Central Plant Metabolism
    JOURNAL OF PROTEOME RESEARCH     2010
Carter C, Pan S, Zouhar J, Avila EL, Girke T, Raikhel NV
The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins.
    THE PLANT CELL     2004
Vernoud, V,Horton, A C,Yang, Z,Nielsen, E
Analysis of the Small GTPase Gene Superfamily of Arabidopsis.
    PLANT PHYSIOLOGY     2003
Boisson, B,Giglione, C,Meinnel, T
Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote.
    JOURNAL OF BIOLOGICAL CHEMISTRY     2003
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2098062

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