Gene Model: AT3G58250.1 [Help]
Name (?)    AT3G58250.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    TRAF-like family protein;(source:Araport11)
Chromosome   3
Locus (?)    AT3G58250 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   nucleus
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2000-09-08 00:00:00.0 NM_115687  full length CDS
genomic   full length cDNA
genomic   full length genomic
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT3G58250.1    317    36182.2    5.6895    MATH:IPR002083(3)
                TRAF-like:IPR008974(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
3 AGI nuc_sequence 21570745 - 21572143 bp reverse   details
3 F9D24 assembly_unit 68987 - 70385 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   1-1399      
coding_region   1-113      
coding_region   268-431      
coding_region   564-775      
coding_region   935-1399      
exon   1-113      
intron   114-267      
exon   268-431      
intron   432-563      
exon   564-775      
intron   776-934      
exon   935-1399      
Polymorphism (?)
Showing 15 of 32 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
FLAG_312A10   insertion   promoter   unknown
FLAG_342A09   insertion   promoter   unknown
GK-314A04-015823   insertion   promoter   unknown
GK-320B01-015944   insertion   intron   unknown
GK-320B01-015948   insertion   intron   unknown
GK-443E12-024538   insertion   exon   unknown
GK-447D04-024530   insertion   promoter   unknown
ossowski_1206322   deletion   promoter   unknown
ossowski_1206323   deletion   promoter   unknown
ossowski_642657   substitution   intron   unknown
ossowski_642659   substitution   promoter   unknown
ossowski_642660   substitution   promoter   unknown
ossowski_642663   substitution   promoter   unknown
ossowski_642664   substitution   promoter   unknown
ossowski_642665   substitution   promoter   unknown
Germplasm
(?)
Showing 6 of 6 entries
 
Name   Polymorphisms   Background   Stock Name   Select
SAIL_162_H12   SAIL_162_H12.v1     CS807865  
Images
None available  
Phenotypes (?)
None available
SAIL_398_E06   SAIL_398_E06.v1     not an ABRC stock  
Images
None available  
Phenotypes (?)
None available
SALK_014309   SALK_014309     SALK_014309  
Images
None available  
Phenotypes (?)
None available
SALK_014309C   SALK_014309     SALK_014309C  
Images
None available  
Phenotypes (?)
None available
SALK_084057   SALK_084057.36.35.x; SALKseq_084057.2; SALKseq_084057.3; SALKseq_084057.1     SALK_084057  
Images
None available  
Phenotypes (?)
None available
SALK_084057C   SALK_084057.36.35.x     SALK_084057C  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   several hypothetical proteins - Arabidopsis thaliana   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
*Town, Chris Redman, Julia Zhuang, Jun Monaghan, Erin Wang, Wei Moskal, William Wu, Hank Quan, Hui Underwood, Beverly Xiao, Yongli
Understanding the function of unknown genes in Arabidopsis by quantitative real time PCR expression profiling and promoter-reporter expression analysis in transgenic plants
    19TH INTERNATIONAL CONFERENCE ON ARABIDOPSIS RESEARCH     2008
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2085354

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