Gene Model: AT3G54100.1 [Help]
Name (?)    AT3G54100.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    O-fucosyltransferase family protein;(source:Araport11)
Chromosome   3
Locus (?)    AT3G54100 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   Golgi apparatus
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2000-09-08 00:00:00.0 NM_115270  full length CDS
genomic   full length genomic
genomic   full length cDNA
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT3G54100.1    638    72906.5    9.2484    GDP-fucose protein O-fucosyltransferase:IPR019378(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
3 AGI nuc_sequence 20034071 - 20037953 bp reverse   details
3 F24B22 assembly_unit 19173 - 23055 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   80-3503      
5' utr   1-79      
coding_region   80-655      
coding_region   1574-1646      
coding_region   1736-1806      
coding_region   1909-1997      
coding_region   2095-2227      
coding_region   2353-2585      
coding_region   2668-3144      
coding_region   3239-3503      
exon   1-655      
intron   656-1573      
exon   1574-1646      
intron   1647-1735      
exon   1736-1806      
intron   1807-1908      
exon   1909-1997      
intron   1998-2094      
exon   2095-2227      
intron   2228-2352      
exon   2353-2585      
intron   2586-2667      
exon   2668-3144      
intron   3145-3238      
exon   3239-3883      
3' utr   3504-3883      
Polymorphism (?)
Showing 15 of 28 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
GK-041F06-015219   insertion   exon   unknown
GK-041F06-015226   insertion   exon   unknown
GK-093D06-011954   insertion   intron   unknown
GK-824F04-025528   insertion   promoter   unknown
GT24046.Ds5.05.20.2008.jz38.565   insertion   exon   unknown
ossowski_1156783   insertion   intron   unknown
ossowski_632525   substitution   coding_region   unknown
ossowski_632529   substitution   intron   unknown
ossowski_632531   substitution   intron   unknown
ossowski_632533   substitution   coding_region   unknown
ossowski_632534   substitution   promoter   unknown
ossowski_632536   substitution   promoter   unknown
PERL0633658   substitution   exon   unknown
PERL0633660   substitution   exon   unknown
PERL0633661   substitution   exon   unknown
Germplasm
(?)
Showing 8 of 8 entries
 
Name   Polymorphisms   Background   Stock Name   Select
SAIL_1187_B02   SAIL_1187_B02.v1     CS843932  
Images
None available  
Phenotypes (?)
None available
SAIL_1187_C02   SAIL_1187_C02.v1     CS843939  
Images
None available  
Phenotypes (?)
None available
SAIL_168_G11   SAIL_168_G11.v1     CS808098  
Images
None available  
Phenotypes (?)
None available
SAIL_168_H11   SAIL_168_H11.v1     CS808105  
Images
None available  
Phenotypes (?)
None available
SAIL_540_E07   SAILseq_540_E07.1; SAIL_540_E07.v1; SAILseq_540_E07.2     CS822905  
Images
None available  
Phenotypes (?)
None available
SAIL_97_F01   SAIL_97_F01.v1     CS804665  
Images
None available  
Phenotypes (?)
None available
SALK_000870   SALK_000870.53.00.n     SALK_000870  
Images
None available  
Phenotypes (?)
None available
SALK_000870C   SALK_000870.53.00.n     SALK_000870C  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   axi1 protein, Nicotiana tabacum, PIR:A44226   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
 
     
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2080284

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