Gene Model: AT3G53700.1 [Help]
Name (?)    AT3G53700.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11)
Chromosome   3
Locus (?)    AT3G53700 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
MEE40     MATERNAL EFFECT EMBRYO ARREST 40    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   chloroplast, mitochondrion
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2004-03-04 18:34:00.0 NM_115230  full length genomic
genomic AGI-TIGR 2002-09-20 00:00:00.0 NM_115230  full length CDS
genomic   full length cDNA
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT3G53700.1    754    84550.5    5.061    Pentatricopeptide repeat:IPR002885(47)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
3 AGI nuc_sequence 19900280 - 19902884 bp forward   details
3 F4P12 assembly_unit 140950 - 143554 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   24-2288      
5' utr   1-23      
coding_region   24-2288      
exon   1-2605      
3' utr   2289-2605      
Polymorphism (?)
Showing 15 of 82 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
FLAG_202H07   insertion   exon   unknown
FLAG_202H07   insertion   promoter   unknown
FLAG_401B09   insertion   exon   unknown
GK-150B09-013073   insertion   exon   unknown
GK-150B09-013398   insertion   exon   unknown
GK-232B03-014314   insertion   exon   unknown
GK-702G05-025033   insertion   exon   unknown
GK-702G05-025104   insertion   exon   unknown
GK-702G05-025184   insertion   exon   unknown
GT13166.Ds5.02.10.2006.jy75.394   insertion   exon   unknown
GT13166.Ds5.02.10.2006.jy75.394   insertion   promoter   unknown
MASC06311   deletion   promoter   unknown
ossowski_631558   substitution   promoter   unknown
ossowski_631560   substitution   promoter   unknown
ossowski_631562   substitution   promoter   unknown
Germplasm
(?)
Showing 7 of 7 entries
 
Name   Polymorphisms   Background   Stock Name   Select
SAIL_1155_G03   SAIL_1155_G03.v1     CS842595   not available
Images
None available  
Phenotypes (?)
None available
SAIL_324_G12   SAIL_324_G12     CS873178  
Images
None available  
Phenotypes (?)
None available
SALK_031345   SALK_031345.51.20.x     SALK_031345   not available
Images
None available  
Phenotypes (?)
None available
SALK_033341   SALK_033341; SALKseq_033341.0     SALK_033341  
Images
None available  
Phenotypes (?)
None available
SALK_040773C   SALK_040773.51.85.x     SALK_040773C  
Images
None available  
Phenotypes (?)
None available
SALK_091484   SALK_091484.54.00.x; SALKseq_091484.2; SALKseq_091484.3; SALKseq_091484.0     SALK_091484  
Images
None available  
Phenotypes (?)
None available
SALK_091484C   SALK_091484.54.00.x     SALK_091484C  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   crp1 protein, Zea mays, PIR:T01685; supported by cDNA: gi 15982930 gb AY057573.1   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
Zybailov, Boris, Rutschow, Heidi, Friso, Giulia, Rudella, Andrea, Emanuelsson, Olof, Sun, Qi, van Wijk, Klaas J
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.
    PLOS ONE     2008
Update History (?)  
AT3G53700.1 replaces AT3G53700.1 on 2004-02-23
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:3699886

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