Gene Model: AT3G49340.1 [Help]
Name (?)    AT3G49340.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Cysteine proteinases superfamily protein;(source:Araport11)
Chromosome   3
Locus (?)    AT3G49340 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2000-09-08 00:00:00.0 NM_114794  full length CDS
genomic   full length cDNA
genomic   full length genomic
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT3G49340.1    341    37687.6    4.2674    Peptidase, cysteine peptidase active site:IPR000169(3)
                Proteinase inhibitor I29, cathepsin propeptide:IPR013201(2)
                Peptidase C1A, papain C-terminal:IPR000668(5)
                Peptidase C1A, papain:IPR013128(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
3 AGI nuc_sequence 18293347 - 18294577 bp reverse   details
3 F2K15 assembly_unit 96004 - 97234 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   1-1231      
coding_region   1-445      
coding_region   651-1231      
exon   1-445      
intron   446-650      
exon   651-1231      
Polymorphism (?)
Showing 15 of 26 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
GK-262E07-014951   insertion   promoter   unknown
GK-282F01-015177   insertion   exon   unknown
GK-282F01-015202   insertion   exon   unknown
GK-282F02-015177   insertion   exon   unknown
GK-308D09-015783   insertion   exon   unknown
GK-308D09-015815   insertion   exon   unknown
ossowski_1204893   deletion   coding_region   unknown
ossowski_1204894   deletion   promoter   unknown
ossowski_617669   substitution   coding_region   unknown
ossowski_617670   substitution   coding_region   unknown
ossowski_617673   substitution   promoter   unknown
ossowski_617677   substitution   promoter   unknown
PERL0620131   substitution   exon   unknown
PERL0620135   substitution   exon   unknown
PERL0620136   substitution   coding_region   unknown
Germplasm
(?)
Showing 5 of 5 entries
 
Name   Polymorphisms   Background   Stock Name   Select
SALK_039844   SALKseq_039844.0; SALK_039844     SALK_039844  
Images
None available  
Phenotypes (?)
None available
SALK_039844C   SALK_039844     SALK_039844C  
Images
None available  
Phenotypes (?)
None available
SALK_120727   SALK_120727.47.20.x     SALK_120727  
Images
None available  
Phenotypes (?)
None available
SALK_131226   SALKseq_131226.2; SALKseq_131226.1; SALK_131226.39.25.x; SALKseq_131226.0     SALK_131226  
Images
None available  
Phenotypes (?)
None available
SALK_131226C   SALK_131226.39.25.x     SALK_131226C  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   contains similarity to cysteine proteinase GI:535454 from (Alnus glutinosam)   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
 
     
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2082880

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