Gene Model: AT3G47720.1 [Help]
Name (?)    AT3G47720.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.
Chromosome   3
Locus (?)    AT3G47720 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
SRO4     SIMILAR TO RCD ONE 4    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   nucleus
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2004-03-04 18:34:00.0 NM_114640  full length CDS
genomic   full length genomic
genomic   full length cDNA
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT3G47720.1    316    35420.0    7.6429    RST domain of plant C-terminal:IPR022003(1)
                Poly(ADP-ribose) polymerase, catalytic domain:IPR012317(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
3 AGI nuc_sequence 17592625 - 17594132 bp forward   details
3 T23J7 assembly_unit 16790 - 18297 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   147-1342      
5' utr   1-59      
5' utr   145-146      
coding_region   147-625      
coding_region   719-966      
coding_region   1039-1148      
coding_region   1229-1342      
exon   1-59      
intron   60-144      
exon   145-625      
intron   626-718      
exon   719-966      
intron   967-1038      
exon   1039-1148      
intron   1149-1228      
exon   1229-1508      
3' utr   1343-1508      
Polymorphism (?)
Showing 15 of 15 entries
 
name (?)   type (?)   Polymorphism site   Allele type (?)
GK-264E12-014997   insertion   promoter   unknown
GK-581D04-021319   insertion   promoter   unknown
ossowski_1204535   deletion   promoter   unknown
ossowski_611462   substitution   promoter   unknown
ossowski_611463   substitution   promoter   unknown
ossowski_611464   substitution   coding_region   unknown
ossowski_611465   substitution   intron   unknown
ossowski_611466   substitution   coding_region   unknown
SALK_002693.35.60.x   insertion   promoter   unknown
SALK_002924   insertion   promoter   unknown
SALK_002924.54.75.x   insertion   promoter   unknown
SALK_033025   insertion   exon   unknown
SALK_033025.56.00.x   insertion   exon   unknown
SALK_111535.36.80.x   insertion   promoter   unknown
SALK_111544.52.55.x   insertion   promoter   unknown
Germplasm
(?)
Showing 6 of 6 entries
 
Name   Polymorphisms   Background   Stock Name   Select
SALK_002924   SALK_002924     SALK_002924  
Images
None available  
Phenotypes (?)
None available
SALK_002924C   SALK_002924     SALK_002924C  
Images
None available  
Phenotypes (?)
None available
SALK_033025   SALKseq_033025.1; SALK_033025; SALKseq_033025.0     SALK_033025  
Images
None available  
Phenotypes (?)
None available
SALK_111535   SALK_111535.36.80.x     SALK_111535  
Images
None available  
Phenotypes (?)
None available
SALK_111544   SALK_111544.52.55.x     SALK_111544  
Images
None available  
Phenotypes (?)
None available
SALK_111544C   SALK_111544.52.55.x     SALK_111544C  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   predicted protein, Arabidopsis thaliana   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
Tiina Kuusela, Jaakko Kangasjärvi
Characterization of a novel, RCD1-related gene family
    15TH INTERNATIONAL CONFERENCE ON ARABIDOPSIS RESEARCH     2004
Update History (?)  
AT3G47720.1 replaces SRO4 on 2005-04-11
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2100356

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