Gene Model: AT3G26770.1 [Help]
Name (?)    AT3G26770.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
Chromosome   3
Locus (?)    AT3G26770 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2001-11-17 17:57:00.0 NM_113589  full length CDS
genomic   full length cDNA
genomic   full length genomic
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT3G26770.1    306    31783.3    7.9874    Short-chain dehydrogenase/reductase SDR:IPR002198(5)
                Glucose/ribitol dehydrogenase:IPR002347(6)
                NAD(P)-binding domain:IPR016040(2)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
3 AGI nuc_sequence 9845396 - 9847148 bp forward   details
3 MDJ14 assembly_unit 11863 - 13615 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   99-1684      
5' utr   1-98      
coding_region   99-133      
coding_region   216-293      
coding_region   590-1020      
coding_region   1308-1684      
exon   1-133      
intron   134-215      
exon   216-293      
intron   294-589      
exon   590-1020      
intron   1021-1307      
exon   1308-1753      
3' utr   1685-1753      
Polymorphism (?)
Showing 15 of 22 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
GT7195.Ds5.07.07.00.b.185   insertion   exon   unknown
ossowski_1152221   insertion   promoter   unknown
ossowski_506286   substitution   promoter   unknown
ossowski_506287   substitution   promoter   unknown
ossowski_506288   substitution   promoter   unknown
ossowski_506289   substitution   promoter   unknown
ossowski_506290   substitution   promoter   unknown
ossowski_506292   substitution   coding_region   unknown
ossowski_506293   substitution   coding_region   unknown
ossowski_506294   substitution   coding_region   unknown
ossowski_506295   substitution   coding_region   unknown
ossowski_506296   substitution   coding_region   unknown
ossowski_506297   substitution   coding_region   unknown
ossowski_506299   substitution   coding_region   unknown
ossowski_506300   substitution   coding_region   unknown
Germplasm
(?)
Showing 3 of 3 entries
 
Name   Polymorphisms   Background   Stock Name   Select
SALK_080859   SALKseq_080859.1; SALKseq_080859.0; SALK_080859.52.15.x     SALK_080859  
Images
None available  
Phenotypes (?)
None available
SALK_080859C   SALK_080859.52.15.x     SALK_080859C  
Images
None available  
Phenotypes (?)
None available
WiscDsLox481-484F19   WiscDsLox481-484F19.2; WiscDsLox481-484F19     CS857964  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   contains Pfam profile: PF00106 short chain dehydrogenase; similar to sex determination protein tasselseed 2 GB:P50160 (Zea mays); supported by cDNA: gi 15529183 gb AY052216.1   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
Duarte, Jill M, Cui, Liying, Wall, P Kerr, Zhang, Qing, Zhang, Xiaohong, Leebens-Mack, Jim, Ma, Hong, Altman, Naomi, Depamphilis, Claude W
Expression Pattern Shifts Following Duplication Indicative of Subfunctionalization and Neofunctionalization in Regulatory Genes of Arabidopsis.
    MOLECULAR BIOLOGY AND EVOLUTION     2005
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2088398

printer-friendly version