Gene Model: AT3G07090.1 [Help]
Name (?)    AT3G07090.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    PPPDE putative thiol peptidase family protein;(source:Araport11)
Chromosome   3
Locus (?)    AT3G07090 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   cytoplasm
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2002-09-20 00:00:00.0 NM_111589  full length CDS
genomic   full length genomic
genomic   full length cDNA
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT3G07090.1    265    28845.8    5.6307    Domain of unknown function DUF862, eukaryotic:IPR008580(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
3 AGI nuc_sequence 2242998 - 2244820 bp reverse   details
3 F17A9 assembly_unit 82091 - 83913 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   345-1668      
5' utr   1-64      
5' utr   316-344      
coding_region   345-353      
coding_region   447-544      
coding_region   890-1206      
coding_region   1295-1668      
exon   1-64      
intron   65-315      
exon   316-353      
intron   354-446      
exon   447-544      
intron   545-889      
exon   890-1206      
intron   1207-1294      
exon   1295-1823      
3' utr   1669-1823      
Polymorphism (?)
Showing 15 of 33 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
FLAG_583D03   insertion   exon   unknown
FLAG_583H02   insertion   exon   unknown
GK-034G09-015037   insertion   exon   unknown
GK-126F07-025919   insertion   intron   unknown
GK-645E07-021383   insertion   exon   unknown
GK-645E07-021383   insertion   promoter   unknown
GK-818C10-025607   insertion   promoter   unknown
GK-818C10-025637   insertion   promoter   unknown
ossowski_1198378   deletion   promoter   unknown
ossowski_455768   substitution   intron   unknown
ossowski_455771   substitution   promoter   unknown
ossowski_455772   substitution   promoter   unknown
PERL0432837   substitution   exon   unknown
PERL0432838   substitution   intron   unknown
PERL0432839   substitution   exon   unknown
Germplasm
(?)
Showing 9 of 9 entries
 
Name   Polymorphisms   Background   Stock Name   Select
SALK_011655   SALK_011655     SALK_011655  
Images
None available  
Phenotypes (?)
None available
SALK_011655C   SALK_011655     SALK_011655C  
Images
None available  
Phenotypes (?)
None available
SALK_019711   SALK_019711.18.75.x     SALK_019711  
Images
None available  
Phenotypes (?)
None available
SALK_019711c   SALK_019711.18.75.x     SALK_019711C  
Images
None available  
Phenotypes (?)
None available
SALK_029255   SALK_029255.55.50.x     SALK_029255  
Images
None available  
Phenotypes (?)
None available
SALK_059876   SALKseq_059876.0; SALK_059876.28.35.x     SALK_059876  
Images
None available  
Phenotypes (?)
None available
SALK_126897   SALK_126897.49.20.x     SALK_126897  
Images
None available  
Phenotypes (?)
None available
WiscDsLox407A11   WiscDsLox407A11.3; WiscDsLox407A11.0; WiscDsLox407A11.1; WiscDsLox407A11.2; WiscDsLox407A11     CS854498  
Images
None available  
Phenotypes (?)
None available
WiscDsLox475C12   WiscDsLox475C12; WiscDsLox475C12.0     CS857556  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
Community Comments (?) (shows only the most recent comments by default)
 
     
Update History (?)  
AT3G07090.1 replaces AT3G07090.1 on 2004-02-23
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:3698372

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