Gene Model: AT2G46090.1 [Help]
Name (?)    AT2G46090.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Encodes a putative sphingosine kinase (SphK) containing the five conserved domains (C1-C5) previously identified in SphKs.
Chromosome   2
Locus (?)    AT2G46090 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
LCBK2     LONG-CHAIN BASE (LCB) KINASE 2    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   cytoplasm
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2001-01-25 00:00:00.0 NM_130172  full length CDS
genomic   full length genomic
genomic   full length cDNA
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT2G46090.1    364    39654.9    8.6438    Diacylglycerol kinase, catalytic domain:IPR001206(3)
                Diacylglycerol/lipid kinase:IPR005218(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
2 AGI nuc_sequence 18950856 - 18953275 bp forward   details
2 T3F17 assembly_unit 70293 - 72712 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   64-2224      
5' utr   1-63      
coding_region   64-247      
coding_region   408-484      
coding_region   598-651      
coding_region   757-816      
coding_region   903-980      
coding_region   1075-1121      
coding_region   1204-1244      
coding_region   1338-1422      
coding_region   1511-1625      
coding_region   1701-1823      
coding_region   1904-2004      
coding_region   2095-2224      
exon   1-247      
intron   248-407      
exon   408-484      
intron   485-597      
exon   598-651      
intron   652-756      
exon   757-816      
intron   817-902      
exon   903-980      
intron   981-1074      
exon   1075-1121      
intron   1122-1203      
exon   1204-1244      
intron   1245-1337      
exon   1338-1422      
intron   1423-1510      
exon   1511-1625      
intron   1626-1700      
exon   1701-1823      
intron   1824-1903      
exon   1904-2004      
intron   2005-2094      
exon   2095-2420      
3' utr   2225-2420      
Polymorphism (?)
Showing 15 of 39 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
FLAG_211G09   insertion   promoter   unknown
FLAG_539C09   insertion   promoter   unknown
GK-032D05-027723   insertion   promoter   unknown
GK-032D05-027723   insertion   exon   unknown
GK-143H07-013023   insertion   exon   unknown
GK-143H07-013023   insertion   promoter   unknown
GK-186B08-014618   insertion   promoter   unknown
GK-308H01-015783   insertion   exon   unknown
GK-308H01-015783   insertion   promoter   unknown
GK-373A01-017165   insertion   promoter   unknown
GK-590E06-021768   insertion   promoter   unknown
GK-590E06-021773   insertion   promoter   unknown
GK-759A06-023802   insertion   promoter   unknown
GK-816H05-025606   insertion   exon   unknown
GK-816H05-025638   insertion   exon   unknown
Germplasm
(?)
Showing 7 of 7 entries
 
Name   Polymorphisms   Background   Stock Name   Select
SALK_053022   SALK_053022.47.60.x; SALKseq_053022.1; SALKseq_053022.2     SALK_053022  
Images
None available  
Phenotypes (?)
None available
SALK_053022C   SALK_053022.47.60.x     SALK_053022C  
Images
None available  
Phenotypes (?)
None available
SALK_129175   SALKseq_129175.0; SALK_129175.44.10.x     SALK_129175  
Images
None available  
Phenotypes (?)
None available
SALK_141338   SALK_141338.15.05.n     SALK_141338  
Images
None available  
Phenotypes (?)
None available
SALK_141351   SALK_141351.43.50.x     SALK_141351  
Images
None available  
Phenotypes (?)
None available
SALK_141351C   SALK_141351.43.50.x     SALK_141351C  
Images
None available  
Phenotypes (?)
None available
WiscDsLox344B04   WiscDsLox344B04.1; WiscDsLox344B04; WiscDsLox344B04.0     CS852026  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   ; supported by cDNA: gi 14423553 gb AF387014.1 AF387014   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
Marion, Jessica, Bach, Lien, Bellec, Yannick, Meyer, Christian, Gissot, Lionel, Faure, Jean-Denis
Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings.
    THE PLANT JOURNAL     2008
Coursol S, Le Stunff H, Lynch DV, Gilroy S, Assmann SM, Spiegel S
Arabidopsis Sphingosine Kinase and the Effects of Phytosphingosine-1-Phosphate on Stomatal Aperture.
    PLANT PHYSIOLOGY     2005
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2063003

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