Gene Model: AT2G46090.1 [Help]
Name (?)    AT2G46090.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Encodes a putative sphingosine kinase (SphK) containing the five conserved domains (C1-C5) previously identified in SphKs.
Chromosome   2
Locus (?)    AT2G46090 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
symbol     full name    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   cytoplasm
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2001-01-25 00:00:00.0 NM_130172  full length CDS
genomic   full length genomic
genomic   full length cDNA
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT2G46090.1    364    39654.9    8.6438    Diacylglycerol kinase, catalytic domain:IPR001206(3)
                Diacylglycerol/lipid kinase:IPR005218(1)
Map Locations
chrom map map type (?) coordinates orientation attrib
2 AGI nuc_sequence 18950856 - 18953275 bp forward   details
2 T3F17 assembly_unit 70293 - 72712 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   64-2224      
5' utr   1-63      
coding_region   64-247      
coding_region   408-484      
coding_region   598-651      
coding_region   757-816      
coding_region   903-980      
coding_region   1075-1121      
coding_region   1204-1244      
coding_region   1338-1422      
coding_region   1511-1625      
coding_region   1701-1823      
coding_region   1904-2004      
coding_region   2095-2224      
exon   1-247      
intron   248-407      
exon   408-484      
intron   485-597      
exon   598-651      
intron   652-756      
exon   757-816      
intron   817-902      
exon   903-980      
intron   981-1074      
exon   1075-1121      
intron   1122-1203      
exon   1204-1244      
intron   1245-1337      
exon   1338-1422      
intron   1423-1510      
exon   1511-1625      
intron   1626-1700      
exon   1701-1823      
intron   1824-1903      
exon   1904-2004      
intron   2005-2094      
exon   2095-2420      
3' utr   2225-2420      
Polymorphism (?)
Showing 15 of 39 entries
(see all)
name (?)   type (?)   Polymorphism site   Allele type (?)
FLAG_211G09   insertion   promoter   unknown
FLAG_539C09   insertion   promoter   unknown
GK-032D05-027723   insertion   promoter   unknown
GK-032D05-027723   insertion   exon   unknown
GK-143H07-013023   insertion   exon   unknown
GK-143H07-013023   insertion   promoter   unknown
GK-186B08-014618   insertion   promoter   unknown
GK-308H01-015783   insertion   exon   unknown
GK-308H01-015783   insertion   promoter   unknown
GK-373A01-017165   insertion   promoter   unknown
GK-590E06-021768   insertion   promoter   unknown
GK-590E06-021773   insertion   promoter   unknown
GK-759A06-023802   insertion   promoter   unknown
GK-816H05-025606   insertion   exon   unknown
GK-816H05-025638   insertion   exon   unknown
Showing 7 of 7 entries
Name   Polymorphisms   Background   Stock Name   Select
SALK_053022   SALK_053022.47.60.x; SALKseq_053022.1; SALKseq_053022.2     SALK_053022  
None available  
Phenotypes (?)
None available
SALK_053022C   SALK_053022.47.60.x     SALK_053022C  
None available  
Phenotypes (?)
None available
SALK_129175   SALKseq_129175.0; SALK_129175.44.10.x     SALK_129175  
None available  
Phenotypes (?)
None available
SALK_141338   SALK_141338.15.05.n     SALK_141338  
None available  
Phenotypes (?)
None available
SALK_141351   SALK_141351.43.50.x     SALK_141351  
None available  
Phenotypes (?)
None available
SALK_141351C   SALK_141351.43.50.x     SALK_141351C  
None available  
Phenotypes (?)
None available
WiscDsLox344B04   WiscDsLox344B04.1; WiscDsLox344B04; WiscDsLox344B04.0     CS852026  
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   ; supported by cDNA: gi 14423553 gb AF387014.1 AF387014   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
Publication (?)   
author/title     source     date
Marion, Jessica, Bach, Lien, Bellec, Yannick, Meyer, Christian, Gissot, Lionel, Faure, Jean-Denis
Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings.
    THE PLANT JOURNAL     2008
Coursol S, Le Stunff H, Lynch DV, Gilroy S, Assmann SM, Spiegel S
Arabidopsis Sphingosine Kinase and the Effects of Phytosphingosine-1-Phosphate on Stomatal Aperture.
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2063003

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