Gene Model: AT1G79040.1 [Help]
Name (?)    AT1G79040.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ.
Chromosome   1
Locus (?)    AT1G79040 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
symbol     full name    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   chloroplast thylakoid membrane, chloroplast thylakoid, thylakoid, chloroplast
Growth and Developmental Stages   expressed during   seedling development stage
Plant structure   expressed in   juvenile vascular leaf, cultured plant cell, vascular leaf
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
mRNA Ceres 2002-04-23 00:00:00.0   full length cDNA
genomic AGI-TIGR 2001-02-07 00:00:00.0 NM_106555  full length CDS
genomic   full length genomic
genomic   full length cDNA
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT1G79040.1    140    14585.6    10.1016    Photosystem II PsbR:IPR006814(1)
Map Locations
chrom map map type (?) coordinates orientation attrib
1 AGI nuc_sequence 29736016 - 29737009 bp forward   details
1 YUP8H12R assembly_unit 122605 - 123598 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   70-766      
5' utr   1-69      
coding_region   70-229      
coding_region   321-379      
coding_region   466-521      
coding_region   619-766      
exon   1-229      
intron   230-320      
exon   321-379      
intron   380-465      
exon   466-521      
intron   522-618      
exon   619-994      
3' utr   767-994      
Polymorphism (?)
Showing 15 of 21 entries
(see all)
name (?)   type (?)   Polymorphism site   Allele type (?)
GK-143C08-012977   insertion   promoter   unknown
GK-457E09-018858   insertion   promoter   unknown
ossowski_1141149   insertion   promoter   unknown
ossowski_1189911   deletion   promoter   unknown
ossowski_1189912   deletion   promoter   unknown
ossowski_264193   substitution   promoter   unknown
PERL0263693   substitution   promoter   unknown
PERL0263696   substitution   promoter   unknown
PERL0263697   substitution   promoter   unknown
PERL0263701   substitution   promoter   unknown
PERL0263702   substitution   promoter   unknown
PERL0263703   substitution   exon   unknown
PERL0263705   substitution   intron   unknown
PERL0263706   substitution   exon   unknown
PERL0263708   substitution   intron   unknown
Showing 6 of 6 entries
Name   Polymorphisms   Background   Stock Name   Select
CS383100   GK-143C08-013023; GK-143C08-013032; GK-143C08-012977     CS383100   not available
None available  
Phenotypes (?)
None available
psbR   SALK_114469.40.45.x     not an ABRC stock  
None available  
Phenotypes (?)

SALK_060351   SALK_060351.39.80.x     SALK_060351  
None available  
Phenotypes (?)
None available
SALK_114469   SALK_114469.0; SALK_114469.40.45.x     SALK_114469  
None available  
Phenotypes (?)
None available
SALK_114469C   SALK_114469.40.45.x     SALK_114469C  
None available  
Phenotypes (?)
None available
SALK_147205   SALK_147205.53.90.x     SALK_147205  
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   similar to photosystem II polypeptide GI:967967 from (Brassica rapa);supported by full-length cDNA: Ceres:110067.   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
Publication (?)   
author/title     source     date
Du, Jin, Huang, Yue-Ping, Xi, Jing, Cao, Min-Jie, Ni, Wan-Song, Chen, Xi, Zhu, Jian-Kang, Oliver, David J, Xiang, Cheng-Bin
Functional Gene-mining for Salt Tolerance Genes with the Power of Arabidopsis.
    THE PLANT JOURNAL     2008
Rutschow, Heidi, Ytterberg, A Jimmy, Friso, Giulia, Nilsson, Robert, van Wijk, Klaas J
Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis thaliana.
Zybailov, Boris, Rutschow, Heidi, Friso, Giulia, Rudella, Andrea, Emanuelsson, Olof, Sun, Qi, van Wijk, Klaas J
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.
    PLOS ONE     2008
Allahverdiyeva, Yagut, Mamedov, Fikret, Suorsa, Marjaana, Styring, Stenbjrn, Vass, Imre, Aro, Eva-Mari
Insights into the function of PsbR protein in Arabidopsis thaliana.
Scheller HV, Lunde C, Haldrup A, Jensen PE
Functional characterization of the photosynthetic apparatus in Arabidopsis thaliana
Friso, G,Giacomelli, L,Ytterberg, A J,Peltier, J B,Rudella, A,Sun, Q,Van Wijk, K J
In-Depth Analysis of the Thylakoid Membrane Proteome of Arabidopsis thaliana Chloroplasts: New Proteins, New Functions, and a Plastid Proteome Database.
    THE PLANT CELL     2004
Peltier, J B,Ytterberg, A J,Sun, Q,Van Wijk, K J
New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast and versatile fractionation strategy.
Kleffmann, T,Russenberger, D,von Zychlinski, A,Christopher, W,Sjolander, K,Gruissem, W,Baginsky, S
The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions.
    CURRENT BIOLOGY     2004
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2207319

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