Gene Model: AT1G77590.1 [Help]
Name (?)    AT1G77590.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Encodes major plastidic long chain acyl-CoA synthetase with a slight substrate preference of oleic acid over any of the other fatty acids.
Chromosome   1
Locus (?)    AT1G77590 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
LACS9     LONG CHAIN ACYL-COA SYNTHETASE 9    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   membrane, chloroplast, chloroplast envelope, mitochondrion
Plant structure   expressed in   plant callus, vascular leaf
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2001-01-29 00:00:00.0 NM_106407  full length CDS
genomic   full length cDNA
genomic   full length genomic
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT1G77590.1    691    76175.1    6.9696    AMP-dependent synthetase/ligase:IPR000873(1)
                AMP-binding, conserved site:IPR020845(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
1 AGI nuc_sequence 29148256 - 29152315 bp reverse   details
1 T5M16 assembly_unit 58777 - 62836 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   540-3815      
5' utr   1-140      
5' utr   485-539      
coding_region   540-986      
coding_region   1091-1171      
coding_region   1384-1638      
coding_region   1790-1921      
coding_region   2009-2182      
coding_region   2375-2604      
coding_region   2702-2819      
coding_region   2922-3053      
coding_region   3147-3281      
coding_region   3370-3576      
coding_region   3651-3815      
exon   1-140      
intron   141-484      
exon   485-986      
intron   987-1090      
exon   1091-1171      
intron   1172-1383      
exon   1384-1638      
intron   1639-1789      
exon   1790-1921      
intron   1922-2008      
exon   2009-2182      
intron   2183-2374      
exon   2375-2604      
intron   2605-2701      
exon   2702-2819      
intron   2820-2921      
exon   2922-3053      
intron   3054-3146      
exon   3147-3281      
intron   3282-3369      
exon   3370-3576      
intron   3577-3650      
exon   3651-4060      
3' utr   3816-4060      
Polymorphism (?)
Showing 15 of 98 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
CU589457   insertion   exon   unknown
FLAG_322A02   insertion   exon   unknown
GK-266B04-014991   insertion   intron   unknown
GK-497C04-019683   insertion   promoter   unknown
GK-497C04-019698   insertion   promoter   unknown
GK-532G05-020365   insertion   exon   unknown
GK-673C05-022949   insertion   exon   unknown
lacs9-2   insertion   exon   unknown
lacs9-3   insertion   exon   unknown
lacs9-4   insertion   exon   unknown
ossowski_1140986   insertion   5'UTR   unknown
ossowski_1140987   insertion   intron   unknown
ossowski_1140989   insertion   intron   unknown
ossowski_1189746   deletion   intron   unknown
ossowski_261353   substitution   5'UTR   unknown
Germplasm
(?)
Showing 15 of 23 entries
(see all)
 
Name   Polymorphisms   Background   Stock Name   Select
CS65782   lacs9-2     CS65782  
Images
None available  
Phenotypes (?)
  • No visible phenotype. Phenotype curated by ABRC.

CS65783   lacs9-3     CS65783  
Images
None available  
Phenotypes (?)
  • No visible phenotype. Phenotype curated by ABRC.

CS65784   lacs9-4     CS65784  
Images
None available  
Phenotypes (?)
  • No visible phenotype. Phenotype curated by ABRC.

SAIL_1155_H04   SAIL_1155_H04     CS878213  
Images
None available  
Phenotypes (?)
None available
SALK_010949   SALK_010949.54.00.x     SALK_010949  
Images
None available  
Phenotypes (?)
None available
SALK_020989   SALK_020989.28.45.x     SALK_020989  
Images
None available  
Phenotypes (?)
None available
SALK_030108   SALK_030108.56.00.x     SALK_030108  
Images
None available  
Phenotypes (?)
None available
SALK_040810   SALKseq_040810.0; SALKseq_040810.1; SALK_040810     SALK_040810  
Images
None available  
Phenotypes (?)
None available
SALK_040810C   SALK_040810.55.75.x     SALK_040810C  
Images
None available  
Phenotypes (?)
None available
SALK_041002   SALK_041002; SALKseq_041002.1     SALK_041002  
Images
None available  
Phenotypes (?)
None available
SALK_053069   SALK_053069.48.85.x; SALKseq_053069.0; SALKseq_053069.2; SALKseq_053069.3; SALKseq_053069.1     SALK_053069  
Images
None available  
Phenotypes (?)
None available
SALK_053069C   SALK_053069.48.85.x     SALK_053069C  
Images
None available  
Phenotypes (?)
None available
SALK_068152   SALK_068152.15.70.x; SALKseq_068152.1; SALKseq_068152.3; SALKseq_068152.4     SALK_068152  
Images
None available  
Phenotypes (?)
None available
SALK_095484   lacs9-3; SALKseq_095484.1; SALKseq_095484.0     SALK_095484  
Images
None available  
Phenotypes (?)
None available
SALK_095484C   lacs9-3     SALK_095484C  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   similar to brain acyl-CoA synthetase II GB:BAA06340 (Rattus norvegicus); Pfam HMM hit: AMP-binding enzymes   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
Zybailov, Boris, Rutschow, Heidi, Friso, Giulia, Rudella, Andrea, Emanuelsson, Olof, Sun, Qi, van Wijk, Klaas J
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.
    PLOS ONE     2008
Mitra, Srijeet, Gantt, John, Ruby, James, Clouse, Steven, Goshe, Michael
Membrane Proteomic Analysis of Arabidopsis thaliana Using Alternative Solubilization Techniques.
    JOURNAL OF PROTEOME RESEARCH     2007
Dunkley, Tom P J, Hester, Svenja, Shadforth, Ian P, Runions, John, Weimar, Thilo, Hanton, Sally L, Griffin, Julian L, Bessant, Conrad, Brandizzi, Federica, Hawes, Chris, Watson, Rod B, Dupree, Paul, Lilley, Kathryn S
Mapping the Arabidopsis organelle proteome.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA     2006
Froehlich, J E,Wilkerson, C G,Ray, W K,McAndrew, R S,Osteryoung, K W,Gage, D A,Phinney, B S
Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis.
    JOURNAL OF PROTEOME RESEARCH     2003
Ferro, M,Salvi, D,Brugiere, S,Miras, S,Kowalski, S,Louwagie, M,Garin, J,Joyard, J,Rolland, N
Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana.
    MOLECULAR & CELLULAR PROTEOMICS : MCP.     2003
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2204764

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