Gene Model: AT1G75800.1 [Help]
Name (?)    AT1G75800.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Pathogenesis-related thaumatin superfamily protein;(source:Araport11)
Chromosome   1
Locus (?)    AT1G75800 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   extracellular region
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2000-07-12 00:00:00.0 NM_106230  full length CDS
genomic   full length cDNA
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT1G75800.1    330    34883.8    4.7428    Thaumatin, pathogenesis-related:IPR001938(9)
                Thaumatin, conserved site:IPR017949(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
1 AGI nuc_sequence 28458782 - 28460854 bp forward   details
1 F10A5 assembly_unit 1 - 533 bp reverse
1 T4O12 assembly_unit 7853 - 9925 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   108-1666      
5' utr   1-107      
coding_region   108-162      
coding_region   244-946      
coding_region   1432-1666      
exon   1-162      
intron   163-243      
exon   244-946      
intron   947-1431      
exon   1432-2073      
3' utr   1667-2073      
Polymorphism (?)
Showing 15 of 41 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
CS70122_1   insertion   intron   unknown
GK-154D03-013140   insertion   intron   unknown
GK-154D03-018348   insertion   intron   unknown
GK-277D02-015155   insertion   exon   unknown
GK-492G04-019641   insertion   exon   unknown
GK-537F03-020491   insertion   promoter   unknown
GK-683B11-023117   insertion   exon   unknown
GK-754C07-023929   insertion   promoter   unknown
MASC07749   substitution   coding_region   unknown
ossowski_257846   substitution   intron   unknown
PERL0256170   substitution   exon   unknown
PERL0256172   substitution   exon   unknown
SAIL_1278_D08.v1   insertion   promoter   unknown
SAIL_129b_D07.v1   insertion   promoter   unknown
SAIL_328_C05.v1   insertion   promoter   unknown
Germplasm
(?)
Showing 15 of 28 entries
(see all)
 
Name   Polymorphisms   Background   Stock Name   Select
CS70122   CS70122_2; CS70122_1     CS70122  
Images
 
Phenotypes (?)
None available
SAIL_1278_D08   SAIL_1278_D08.v1     not an ABRC stock  
Images
None available  
Phenotypes (?)
None available
SAIL_328_C05   SAILseq_328_C05.1; SAIL_328_C05.v1     CS815251  
Images
None available  
Phenotypes (?)
None available
SAIL_328_C06   SAIL_328_C06.v1     CS815252  
Images
None available  
Phenotypes (?)
None available
SAIL_328_D05   SAILseq_328_D05.0; SAIL_328_D05.v1; SAILseq_328_D05.1     CS815260  
Images
None available  
Phenotypes (?)
None available
SAIL_328_D06   SAIL_328_D06.v1     CS815261  
Images
None available  
Phenotypes (?)
None available
SALK_035000   SALK_035000     SALK_035000  
Images
None available  
Phenotypes (?)
None available
SALK_035977   SALK_035977     SALK_035977  
Images
None available  
Phenotypes (?)
None available
SALK_054932   SALK_054932.54.75.x; SALKseq_054932.1; SALKseq_054932.2; SALKseq_054932.3     SALK_054932  
Images
None available  
Phenotypes (?)
None available
SALK_055124   SALK_055124.54.25.x; SALKseq_055124.1; SALKseq_055124.2     SALK_055124  
Images
None available  
Phenotypes (?)
None available
SALK_060641   SALK_060641.48.10.x; SALKseq_060641.1; SALKseq_060641.0     SALK_060641  
Images
None available  
Phenotypes (?)
None available
SALK_061598   SALK_061598; SALKseq_061598.2; SALKseq_061598.0; SALKseq_061598.1     SALK_061598  
Images
None available  
Phenotypes (?)
None available
SALK_061598C   SALK_061598     SALK_061598C  
Images
None available  
Phenotypes (?)
None available
SALK_064823   SALK_064823.38.20.x; SALKseq_064823.1     SALK_064823  
Images
None available  
Phenotypes (?)
None available
SALK_064823C   SALK_064823.38.20.x     SALK_064823C  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   contains Pfam profile: PF00314 Thaumatin family   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
 
     
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2005551

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