Gene Model: AT1G58060.1 [Help]
Name (?)    AT1G58060.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    RNA helicase family protein;(source:Araport11)
Chromosome   1
Locus (?)    AT1G58060 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2004-03-04 18:34:00.0 NM_104588  full length CDS
genomic   full length genomic
genomic   full length cDNA
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT1G58060.1    1459    163598.0    6.1045    DEAD-like helicase:IPR014001(2)
                Domain of unknown function DUF1605:IPR011709(1)
                DNA/RNA helicase, DEAD/DEAH box type, N-terminal:IPR011545(1)
                Helicase-associated domain:IPR007502(2)
                Helicase, C-terminal:IPR001650(3)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
1 AGI nuc_sequence 21489285 - 21501811 bp reverse   details
1 T15M6 assembly_unit 51142 - 63668 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   37-12332      
5' utr   1-36      
coding_region   37-336      
coding_region   441-546      
coding_region   627-820      
coding_region   984-1037      
coding_region   1529-1679      
coding_region   1763-2169      
coding_region   2474-2692      
coding_region   2970-3081      
coding_region   3434-3628      
coding_region   3738-3814      
coding_region   4007-4129      
coding_region   4257-4343      
coding_region   4571-4671      
coding_region   5507-5564      
coding_region   5980-6045      
coding_region   6503-6588      
coding_region   6672-6855      
coding_region   7367-7513      
coding_region   7617-7718      
coding_region   7802-7954      
coding_region   8437-8541      
coding_region   8927-9067      
coding_region   9149-9238      
coding_region   9315-9371      
coding_region   9662-9745      
coding_region   9988-10086      
coding_region   10161-10301      
coding_region   10456-10526      
coding_region   10911-10980      
coding_region   11166-11258      
coding_region   11416-11625      
coding_region   11832-11924      
coding_region   12038-12160      
coding_region   12252-12332      
exon   1-336      
intron   337-440      
exon   441-546      
intron   547-626      
exon   627-820      
intron   821-983      
exon   984-1037      
intron   1038-1528      
exon   1529-1679      
intron   1680-1762      
exon   1763-2169      
intron   2170-2473      
exon   2474-2692      
intron   2693-2969      
exon   2970-3081      
intron   3082-3433      
exon   3434-3628      
intron   3629-3737      
exon   3738-3814      
intron   3815-4006      
exon   4007-4129      
intron   4130-4256      
exon   4257-4343      
intron   4344-4570      
exon   4571-4671      
intron   4672-5506      
exon   5507-5564      
intron   5565-5979      
exon   5980-6045      
intron   6046-6502      
exon   6503-6588      
intron   6589-6671      
exon   6672-6855      
intron   6856-7366      
exon   7367-7513      
intron   7514-7616      
exon   7617-7718      
intron   7719-7801      
exon   7802-7954      
intron   7955-8436      
exon   8437-8541      
intron   8542-8926      
exon   8927-9067      
intron   9068-9148      
exon   9149-9238      
intron   9239-9314      
exon   9315-9371      
intron   9372-9661      
exon   9662-9745      
intron   9746-9987      
exon   9988-10086      
intron   10087-10160      
exon   10161-10301      
intron   10302-10455      
exon   10456-10526      
intron   10527-10910      
exon   10911-10980      
intron   10981-11165      
exon   11166-11258      
intron   11259-11415      
exon   11416-11625      
intron   11626-11831      
exon   11832-11924      
intron   11925-12037      
exon   12038-12160      
intron   12161-12251      
exon   12252-12527      
3' utr   12333-12527      
Polymorphism (?)
Showing 15 of 344 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
AMU-1-408   deletion   unknown   unknown
AMU-1-408   deletion   unknown   unknown
GK-080C08-012670   insertion   exon   unknown
GK-080C08-016175   insertion   exon   unknown
GK-256A07-014920   insertion   intron   unknown
GK-268E07-015061   insertion   intron   unknown
GK-268E07-015068   insertion   intron   unknown
GK-459C02-018854   insertion   exon   unknown
GK-459C02-018860   insertion   intron   unknown
GT21911.Ds5.08.30.2006.jz14.344   insertion   exon   unknown
ossowski_1137118   insertion   intron   unknown
ossowski_1137120   insertion   intron   unknown
ossowski_1137122   insertion   intron   unknown
ossowski_1137124   insertion   intron   unknown
ossowski_1137126   insertion   intron   unknown
Germplasm
(?)
Showing 13 of 13 entries
 
Name   Polymorphisms   Background   Stock Name   Select
CS859852   SALK_056307.40.00.x     CS859852  
Images
None available  
Phenotypes (?)
None available
SAIL_1182_F04   SAIL_1182_F04.v1     CS843765  
Images
None available  
Phenotypes (?)
None available
SAIL_271_C03   SAIL_271_C03.v1     CS812572  
Images
None available  
Phenotypes (?)
None available
SALK_012686   SALK_012686     SALK_012686  
Images
None available  
Phenotypes (?)
None available
SALK_012686C   SALK_012686     SALK_012686C  
Images
None available  
Phenotypes (?)
None available
SALK_026636   SALK_026636.45.90.x     SALK_026636  
Images
None available  
Phenotypes (?)
None available
SALK_054539   SALK_054539.48.15.x     SALK_054539  
Images
None available  
Phenotypes (?)
None available
SALK_056307   SALK_056307.40.00.x; SALKseq_056307.1; SALKseq_056307.101; SALKseq_056307.0     SALK_056307  
Images
None available  
Phenotypes (?)
None available
SALK_056307C   SALK_056307.40.00.x     SALK_056307C  
Images
None available  
Phenotypes (?)
None available
SALK_078387   SALKseq_078387.0; SALKseq_078387.2; SALK_078387.55.75.x; SALKseq_078387.1     SALK_078387  
Images
None available  
Phenotypes (?)
None available
SALK_112974   SALK_112974.48.15.x     SALK_112974  
Images
None available  
Phenotypes (?)
None available
SALK_137763   SALKseq_137763.3; SALK_137763.47.00.x     SALK_137763  
Images
None available  
Phenotypes (?)
None available
SALK_137763C   SALK_137763.47.00.x     SALK_137763C  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
Community Comments (?) (shows only the most recent comments by default)
 
     
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2196264

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