Gene Model: AT1G22260.1 [Help]
Name (?)    AT1G22260.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    One of two nearly identical proteins (ZYP1b) identified by similarity to transverse filament (TF) proteins. These proteins are involved in chromosome synapsis during meiosis I and localize to the synaptonemal complex (SC). Single mutants have reduced fertility and double mutants (induced by RNAi) have severely reduced fertility.
Chromosome   1
Locus (?)    AT1G22260 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
ZYP1a        
ZYP1        
AtZYP1a        
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   nucleus
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic   full length CDS
genomic   full length cDNA
genomic   full length genomic
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT1G22260.1    871    100005.9    5.9699   
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
1 AGI nuc_sequence 7859630 - 7865249 bp reverse   details
1 T16E15 assembly_unit 35786 - 40951 bp forward
1 F16L1 assembly_unit 1 - 654 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   108-5090      
5' utr   1-107      
coding_region   108-252      
coding_region   334-383      
coding_region   594-801      
coding_region   894-1019      
coding_region   1101-1199      
coding_region   1384-2060      
coding_region   2140-2388      
coding_region   2473-2601      
coding_region   2725-2793      
coding_region   2866-2976      
coding_region   3390-3497      
coding_region   3582-3692      
coding_region   3762-3848      
coding_region   4003-4089      
coding_region   4180-4293      
coding_region   4375-4458      
coding_region   4532-4591      
coding_region   4989-5090      
exon   1-252      
intron   253-333      
exon   334-383      
intron   384-593      
exon   594-801      
intron   802-893      
exon   894-1019      
intron   1020-1100      
exon   1101-1199      
intron   1200-1383      
exon   1384-2060      
intron   2061-2139      
exon   2140-2388      
intron   2389-2472      
exon   2473-2601      
intron   2602-2724      
exon   2725-2793      
intron   2794-2865      
exon   2866-2976      
intron   2977-3389      
exon   3390-3497      
intron   3498-3581      
exon   3582-3692      
intron   3693-3761      
exon   3762-3848      
intron   3849-4002      
exon   4003-4089      
intron   4090-4179      
exon   4180-4293      
intron   4294-4374      
exon   4375-4458      
intron   4459-4531      
exon   4532-4591      
intron   4592-4988      
exon   4989-5105      
intron   5106-5405      
exon   5406-5620      
3' utr   5091-5105      
3' utr   5406-5620      
Polymorphism (?)
Showing 15 of 32 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
FLAG_529H09   insertion   exon   unknown
GK-232C04-014314   insertion   exon   unknown
GK-232C04-014314   insertion   promoter   unknown
GK-232C04-014318   insertion   exon   unknown
GK-232C04-014318   insertion   promoter   unknown
GK-702B09-025033   insertion   promoter   unknown
GK-702B09-025104   insertion   promoter   unknown
GK-702B09-025184   insertion   promoter   unknown
ossowski_1179899   deletion   intron   unknown
ossowski_48699   substitution   3'UTR   unknown
ossowski_48699   substitution   exon   unknown
ossowski_48702   substitution   intron   unknown
ossowski_48704   substitution   coding_region   unknown
ossowski_48705   substitution   intron   unknown
PERL0057651   substitution   intron   unknown
Germplasm
(?)
Showing 9 of 9 entries
 
Name   Polymorphisms   Background   Stock Name   Select
SAIL_1158_D12   SAIL_1158_D12.v1     CS842737  
Images
None available  
Phenotypes (?)
None available
SAIL_309_B10   SAILseq_309_B10.1; SAIL_309_B10.v1; SAILseq_309_B10.2     CS814325  
Images
None available  
Phenotypes (?)
None available
SALK_020564   SALK_020564.30.80.x     SALK_020564  
Images
None available  
Phenotypes (?)
None available
SALK_021310   SALK_021310.43.20.x     SALK_021310  
Images
None available  
Phenotypes (?)
None available
SALK_021310C   SALK_021310.43.20.x     SALK_021310C  
Images
None available  
Phenotypes (?)
None available
SALK_035799   SALK_035799.35.50.x     SALK_035799  
Images
None available  
Phenotypes (?)
None available
SALK_035799C   SALK_035799.35.50.x     SALK_035799C  
Images
None available  
Phenotypes (?)
None available
SALK_040213   SALKseq_040213.0; SALK_040213; SALKseq_040213.1     SALK_040213  
Images
None available  
Phenotypes (?)
None available
zyp1a_salk_040213   SALK_040213     not an ABRC stock  
Images
None available  
Phenotypes (?)

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   predicted by genemark.hmm   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
*Town, Chris Redman, Julia Zhuang, Jun Monaghan, Erin Wang, Wei Moskal, William Wu, Hank Quan, Hui Underwood, Beverly Xiao, Yongli
Understanding the function of unknown genes in Arabidopsis by quantitative real time PCR expression profiling and promoter-reporter expression analysis in transgenic plants
    19TH INTERNATIONAL CONFERENCE ON ARABIDOPSIS RESEARCH     2008
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2015030

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