Gene Model: AT1G17770.1 [Help]
Name (?)    AT1G17770.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. A paternally expressed imprinted gene.
Chromosome   1
Locus (?)    AT1G17770 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
SUVH7     SU(VAR)3-9 HOMOLOG 7    
SDG17     SET DOMAIN PROTEIN 17    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   nucleus
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2001-03-12 00:00:00.0 NM_101640  full length CDS
genomic AGI-TIGR 2001-03-12 00:00:00.0 NM_101640  full length genomic
genomic   full length cDNA
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT1G17770.1    693    77631.3    6.0518    Pre-SET domain:IPR007728(2)
                Post-SET domain:IPR003616(1)
                SRA-YDG:IPR003105(3)
                Pre-SET zinc-binding sub-group:IPR003606(1)
                SET domain:IPR001214(3)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
1 AGI nuc_sequence 6120741 - 6122822 bp forward   details
1 F2H15 assembly_unit 1752 - 3833 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   1-2082      
coding_region   1-2082      
exon   1-2082      
Polymorphism (?)
Showing 15 of 18 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
GK-037C06-015009   insertion   exon   unknown
ossowski_37747   substitution   promoter   unknown
ossowski_37748   substitution   promoter   unknown
ossowski_37751   substitution   coding_region   unknown
ossowski_37752   substitution   coding_region   unknown
ossowski_37753   substitution   coding_region   unknown
PERL0045014   substitution   exon   unknown
PERL0045015   substitution   exon   unknown
PERL0045016   substitution   exon   unknown
PERL0045022   substitution   exon   unknown
PERL0045025   substitution   exon   unknown
PERL0045026   substitution   exon   unknown
PERL0045027   substitution   exon   unknown
PERL0045028   substitution   exon   unknown
PERL0045031   substitution   exon   unknown
Germplasm
(?)
Showing 4 of 4 entries
 
Name   Polymorphisms   Background   Stock Name   Select
CS362816   GK-037C06-015009; GK-037C06-030266     CS362816  
Images
None available  
Phenotypes (?)
None available
CS403486   GK-037C06-015009     CS403486  
Images
None available  
Phenotypes (?)
None available
SALK_112939   SALK_112939.40.45.n     SALK_112939  
Images
None available  
Phenotypes (?)
None available
SALK_112939C   SALK_112939.40.45.n     SALK_112939C  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   contains Pfam profiles: PF02178 DNA binding domain with preference for A T rich regions PF00856 SET domain; supported by cDNA: gi 13517754 gb AF344450.1 AF344450   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
 
     
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2030952

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