Gene Model: AT1G17060.1 [Help]
Name (?)    AT1G17060.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Encodes a protein with similarity to other cytochrome P450's and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes have redundant functions in light responsiveness. SOB7 may function in metabolizing brassinolides. Expressed in leaf, root, stem and silique but expression highest in flower and cauline leaves. Dominant overexpressing plants have dwarf phenotype, short siliques/seeds, rounded dark green leaves and short hypocotyls in light and dark. Loss of function alleles result in plants with long hypocotyls.
Chromosome   1
Locus (?)    AT1G17060 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
CYP72C1     CYTOCHROME P450 72C1    
SOB7     SUPPRESSOR OF PHYB-4 7    
SHK1     SHRINK 1    
CHI2     CHIBI 2    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   mitochondrion
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2002-09-20 00:00:00.0 NM_101566  full length CDS
genomic   full length cDNA
genomic   full length genomic
protein
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT1G17060.1    476    54930.5    9.9085    Cytochrome P450, conserved site:IPR017972(1)
                Cytochrome P450:IPR001128(9)
                Cytochrome P450, E-class, group IV:IPR002403(4)
AT1G17060    519    59594.0       
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
1 AGI nuc_sequence 5832097 - 5835456 bp reverse   details
1 F6I1 assembly_unit 12177 - 15536 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   202-3175      
5' utr   1-201      
coding_region   202-484      
coding_region   945-1162      
coding_region   1946-2190      
coding_region   2273-2382      
coding_region   2511-2659      
coding_region   2750-3175      
exon   1-484      
intron   485-944      
exon   945-1162      
intron   1163-1945      
exon   1946-2190      
intron   2191-2272      
exon   2273-2382      
intron   2383-2510      
exon   2511-2659      
intron   2660-2749      
exon   2750-3360      
3' utr   3176-3360      
Polymorphism (?)
Showing 15 of 31 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
chi-2   insertion   unknown   hypermorphic
CYP72C1-1   insertion   exon   unknown
GK-734B06-025422   insertion   intron   unknown
ossowski_1130773   insertion   intron   unknown
ossowski_1130775   insertion   3'UTR   unknown
ossowski_1130776   insertion   promoter   unknown
ossowski_1130777   insertion   promoter   unknown
ossowski_1179163   deletion   intron   unknown
ossowski_1179164   deletion   promoter   unknown
ossowski_36070   substitution   intron   unknown
ossowski_36072   substitution   coding_region   unknown
ossowski_36074   substitution   coding_region   unknown
ossowski_36076   substitution   intron   unknown
PERL0042342   substitution   exon   unknown
PERL0042343   substitution   exon   unknown
Germplasm
(?)
Showing 13 of 13 entries
 
Name   Polymorphisms   Background   Stock Name   Select
chi-2   chi-2     not an ABRC stock  
Images
None available  
Phenotypes (?)
  • chi2 mature plants exhibit phenotypic features such as dwarfism, reduced male fertility and dark green, rounded epinastic leaves. Hypocotyl elongation of de-etiolated chi2 mutant seedlings grown under dim far-red light was severely inhibited. In darkness, chi2 plants were significantly shorted than wild-type plants, with apical hooks opening in the dark. Under monochromatic red, blue and far-red lights, the mutant retained the ability to respond to light, while both responsiveness and sensitivity of the response appeared to be increased. The phenotype was rescued by exogenous application of brassinolide. Phenotype curated by ABRC.

cyp72c1-1   CYP72C1-1     not an ABRC stock  
Images
None available  
Phenotypes (?)
  • Longer hypocotyls in light and dark conditions. Phenotype curated by ABRC.

SAIL_1258_D04   SAIL_1258_D04.v1     CS846536  
Images
None available  
Phenotypes (?)
None available
SAIL_568_C09   SAIL_568_C09     CS874982  
Images
None available  
Phenotypes (?)
None available
SALK_024863   SALK_024863.13.50.x     SALK_024863  
Images
None available  
Phenotypes (?)
None available
SALK_050292   SALK_050292.50.80.x; SALKseq_050292.0     SALK_050292  
Images
None available  
Phenotypes (?)
None available
SALK_050292C   SALK_050292.50.80.x     SALK_050292C  
Images
None available  
Phenotypes (?)
None available
SALK_091797   SALKseq_091797.1; SALK_091797.29.40.x; SALKseq_091797.0; SALKseq_091797.2; SALKseq_091797.3; SALKseq_091797.5     SALK_091797  
Images
None available  
Phenotypes (?)
None available
SALK_091935   SALK_091935.40.40.x     SALK_091935  
Images
None available  
Phenotypes (?)
None available
SALK_120416   CYP72C1-1     SALK_120416  
Images
None available  
Phenotypes (?)
None available
SALK_120416C   CYP72C1-1     SALK_120416C   not available
Images
None available  
Phenotypes (?)
None available
shk-D   shk-D     not an ABRC stock  
Images
None available  
Phenotypes (?)

sob7-1/bas1-2   BAS1-2; CYP72C1-1     not an ABRC stock  
Images
None available  
Phenotypes (?)

    (European Users)
External Link   
Plant Proteome Database
Community Comments (?) (shows only the most recent comments by default)
 
     
Update History (?)  
AT1G17060.1 replaces AT1G17060.1 on 2004-02-23
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:3434588

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