Gene Model: AT1G09940.1 [Help]
Name (?)    AT1G09940.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Encodes glutamyl-tRNA reductase. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins
Chromosome   1
Locus (?)    AT1G09940 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
HEMA2        
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   chloroplast
Plant structure   expressed in   cotyledon
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2001-03-06 00:00:00.0 NM_100868  full length CDS
genomic   full length cDNA
genomic   full length genomic
genomic GenBank 1996-06-05 00:00:00.0 U27118  genomic
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT1G09940.1    530    58291.1    8.8618    Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase:IPR006151(1)
                Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, conserved site:IPR018214(1)
                Tetrapyrrole biosynthesis, glutamyl-tRNA reductase:IPR000343(2)
                Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal:IPR015895(2)
                Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain:IPR015896(2)
                NAD(P)-binding domain:IPR016040(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
1 AGI nuc_sequence 3236995 - 3239554 bp reverse   details
1 F21M12 assembly_unit 123881 - 126440 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   293-2331      
5' utr   1-292      
coding_region   293-530      
coding_region   818-1059      
coding_region   1219-2331      
exon   1-530      
intron   531-817      
exon   818-1059      
intron   1060-1218      
exon   1219-2560      
3' utr   2332-2560      
Polymorphism (?)
Showing 15 of 100 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
athema2   insertion   exon   unknown
AY199616   insertion   promoter   unknown
AY199617   insertion   promoter   unknown
FLAG_283F01   insertion   promoter   unknown
GK-082C06-011867   insertion   promoter   unknown
GK-779H03-024662   insertion   exon   unknown
GK-902A05-029993   insertion   intron   unknown
GK-902A05-030005   insertion   intron   unknown
GK-903A05-029992   insertion   intron   unknown
ossowski_1129761   insertion   5'UTR   unknown
ossowski_1129762   insertion   3'UTR   unknown
ossowski_1129763   insertion   3'UTR   unknown
ossowski_1178184   deletion   5'UTR   unknown
ossowski_1178185   deletion   intron   unknown
ossowski_1178186   deletion   promoter   unknown
Germplasm
(?)
Showing 10 of 10 entries
 
Name   Polymorphisms   Background   Stock Name   Select
athema2   athema2     not an ABRC stock  
Images
None available  
Phenotypes (?)

CS65608   SALK_052000.55.00.x     CS65608  
Images
None available  
Phenotypes (?)
None available
SALK_010020   SALK_010020     SALK_010020  
Images
None available  
Phenotypes (?)
None available
SALK_010028   SALK_010028     SALK_010028  
Images
None available  
Phenotypes (?)
None available
SALK_050955   SALK_050955     SALK_050955  
Images
None available  
Phenotypes (?)
None available
SALK_052000   SALK_052000.55.00.x     SALK_052000  
Images
None available  
Phenotypes (?)
None available
SALK_061742   SALKseq_061742.0; SALK_061742; SALKseq_061742.2; SALKseq_061742.1     SALK_061742  
Images
None available  
Phenotypes (?)
None available
SALK_061742C   SALK_061742     SALK_061742C  
Images
None available  
Phenotypes (?)
None available
SALK_144312   SALK_144312.24.35.x     SALK_144312  
Images
None available  
Phenotypes (?)
None available
WiscDsLox421H1   WiscDsLox421H1; WiscDsLox421H1.0     CS855106  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   similar to GB:P49294 and to A. thaliana HEMA2 (gb U27118)   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
Nagai S, Koide M, Takahashi S, Kikuta A, Aono M, Sasaki-Sekimoto Y, Ohta H, Takamiya KI, Masuda T
Induction of Isoforms of Tetrapyrrole Biosynthetic Enzymes, atHEMA2 and atFC1, under Stress Conditions and their Physiological Functions in Arabidopsis.
    PLANT PHYSIOLOGY     2007
Kumar, A M,Csankovszki, G,Soll, D
A second and differentially expressed glutamyl-tRNA reductase gene from Arabidopsis thaliana.
    PLANT MOLECULAR BIOLOGY     1996
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2024391

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