Gene Model: AT1G05590.1 [Help]
Name (?)    AT1G05590.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Encodes a protein with β-hexosaminidase activity (the enzyme is active with p-nitrophenyl-β-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-β-N-acetylgalactosaminide). Chitotriose-PA was digested almost completely overnight by a 50% ammonium sulfate fraction of a supernatant yeast expressing AtHEX3.
Chromosome   1
Locus (?)    AT1G05590 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Symbols  
symbol     full name    
HEXO2     BETA-HEXOSAMINIDASE 2    
ATHEX3     BETA-HEXOSAMINIDASE 3    
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Cellular Component   located in   extracellular region
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2001-03-12 00:00:00.0 NM_100439  full length CDS
genomic AGI-TIGR 2004-03-04 18:34:00.0 NM_100439  full length genomic
genomic   full length cDNA
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT1G05590.1    580    64990.6    6.3653    Glycoside hydrolase, family 20, catalytic core:IPR015883(1)
                Glycoside hydrolase, family 20:IPR001540(9)
                Glycoside hydrolase, superfamily:IPR017853(1)
                Glycoside hydrolase, subgroup, catalytic core:IPR013781(1)
                Acetylhexosaminidase, subunit a/b:IPR015882(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
1 AGI nuc_sequence 1669350 - 1671876 bp forward   details
1 F3F20 assembly_unit 50874 - 53400 bp forward
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   522-2337      
5' utr   1-178      
5' utr   502-521      
coding_region   522-1311      
coding_region   1385-2337      
exon   1-178      
intron   179-501      
exon   502-1311      
intron   1312-1384      
exon   1385-2527      
3' utr   2338-2527      
Polymorphism (?)
Showing 15 of 34 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
GK-180E03-013602   insertion   unknown   unknown
GK-180E03-013602   insertion   promoter   unknown
GK-180E03-013602   insertion   exon   unknown
GK-196C10-020163   insertion   unknown   unknown
GK-196C10-020163   insertion   promoter   unknown
GK-196C10-020163   insertion   exon   unknown
GK-216A05-014145   insertion   exon   unknown
GK-216A05-014145   insertion   promoter   unknown
GK-286H01-015494   insertion   promoter   unknown
GK-286H01-015496   insertion   promoter   unknown
GK-286H01-015496   insertion   exon   unknown
GK-405A04-017820   insertion   promoter   unknown
GK-405A04-017820   insertion   exon   unknown
GK-510A08-019532   insertion   exon   unknown
GK-510A08-019542   insertion   exon   unknown
Germplasm
(?)
Showing 10 of 10 entries
 
Name   Polymorphisms   Background   Stock Name   Select
CS25072   SALK_052154.48.55.x     CS25072  
Images
None available  
Phenotypes (?)
None available
CS25102   SALK_070818.53.10.x     CS25102  
Images
None available  
Phenotypes (?)
None available
CS418754   GK-196C10-020163     CS418754  
Images
None available  
Phenotypes (?)
None available
CS427445   GK-286H01-015494     CS427445  
Images
None available  
Phenotypes (?)
None available
CS868749   SALK_052154.48.55.x     CS868749  
Images
None available  
Phenotypes (?)
None available
SALK_052154   SALK_052154.48.55.x; SALKseq_052154.0; SALKseq_052154.1     SALK_052154  
Images
None available  
Phenotypes (?)
None available
SALK_056180   SALKseq_056180.1; SALK_056180.55.10.x     SALK_056180  
Images
None available  
Phenotypes (?)
None available
SALK_056185   SALKseq_056185.0; SALK_056185.53.00.x     SALK_056185  
Images
None available  
Phenotypes (?)
None available
SALK_070818   SALKseq_070818.0; SALK_070818.53.10.x     SALK_070818  
Images
None available  
Phenotypes (?)
None available
SALK_070818C   SALK_070818.53.10.x     SALK_070818C  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   Similar to hexosaminidase, gi 1170249, gi 1076942 and others   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
 
     
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2031987

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