Gene Model: AT1G03220.1 [Help]
Name (?)    AT1G03220.1
Name Type (?)    orf
Gene Model Type (?)    protein_coding
Description    Eukaryotic aspartyl protease family protein;(source:Araport11)
Chromosome   1
Locus (?)    AT1G03220 (Note: use this locus link to see all functional annotations, associated gene models, markers and ESTs).
Map Detail Image  
detail
Annotations (?)  
Category   Relationship Type (?)   Keyword (?)
GO Biological Process   involved in   response to salt stress
GO Cellular Component   located in   plant-type cell wall, extracellular region, membrane, cell wall, plasmodesma, Golgi apparatus
  not located in   cytosol
Plant structure   expressed in   stem, plant callus, vascular leaf, root
Annotation Detail
Sequence (?)  
Bio Source (?) Source Date GenBank Accession Sequence
genomic AGI-TIGR 2001-03-06 00:00:00.0 NM_100204  full length CDS
genomic AGI-TIGR 2004-03-04 18:34:00.0 NM_100204  full length genomic
genomic   full length cDNA
protein
Protein Data  
name   Length(aa)   molecular weight   isoelectric point   domains( # of domains)
AT1G03220.1    433    45716.9    8.7806    Peptidase aspartic:IPR021109(1)
                Peptidase aspartic, catalytic:IPR009007(2)
                Peptidase A1:IPR001461(1)
Map Locations
(?)
 
chrom map map type (?) coordinates orientation attrib
1 AGI nuc_sequence 787122 - 788651 bp forward   details
1 F15K9 assembly_unit 47745 - 49274 bp reverse
Map Links (?)   Map Viewer     Sequence Viewer     GBrowse  
Gene Feature (?)  
type   coordinates   annotation source   date  
ORF   22-1323      
5' utr   1-21      
coding_region   22-1323      
exon   1-1530      
3' utr   1324-1530      
Polymorphism (?)
Showing 15 of 24 entries
(see all)
 
name (?)   type (?)   Polymorphism site   Allele type (?)
GK-173G02-013459   insertion   exon   unknown
GK-173H03-013459   insertion   exon   unknown
MASC07586   substitution   coding_region   unknown
MASC07587   substitution   coding_region   unknown
MASC07588   substitution   coding_region   unknown
MASC09080   substitution   coding_region   unknown
MASC09081   substitution   coding_region   unknown
ossowski_1177430   deletion   promoter   unknown
ossowski_4973   substitution   promoter   unknown
ossowski_4974   substitution   promoter   unknown
ossowski_4980   substitution   coding_region   unknown
ossowski_4981   substitution   coding_region   unknown
ossowski_4982   substitution   coding_region   unknown
ossowski_4983   substitution   coding_region   unknown
PERL0005587   substitution   promoter   unknown
Germplasm
(?)
Showing 8 of 8 entries
 
Name   Polymorphisms   Background   Stock Name   Select
CS329763   GK-173G02-013459     CS329763  
Images
None available  
Phenotypes (?)
None available
CS416586   GK-173G02-013459     CS416586  
Images
None available  
Phenotypes (?)
None available
SAIL_293_F02   SAIL_293_F02     CS874338  
Images
None available  
Phenotypes (?)
None available
SAIL_616_E12   SAIL_616_E12.v2     CS826419  
Images
None available  
Phenotypes (?)
None available
SALK_011063   SALK_011063.32.10.x     SALK_011063  
Images
None available  
Phenotypes (?)
None available
SALK_041024   SALK_041024.29.99.f     SALK_041024  
Images
None available  
Phenotypes (?)
None available
SALK_147847   SALK_147847.30.30.x     SALK_147847  
Images
None available  
Phenotypes (?)
None available
SALK_147847C   SALK_147847.30.30.x     SALK_147847C  
Images
None available  
Phenotypes (?)
None available

    (European Users)
External Link   
Plant Proteome Database
AGI-TIGR's comment   Strong similarity to gb D14550 extracellular dermal glycoprotein (EDGP) precursor from Daucus carota. ESTs gb H37281, gb T44167, gb T21813, gb N38437, gb Z26470, gb R65072, gb N76373, gb F15470, gb Z35182, gb H76373, gb Z34678 and gb Z35387 come from this   2002-05-02
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     date
Ito, J, Batth, T S, Petzold, C J, Redding-Johanson, A M, Mukhopadhyay, A, Verboom, R, Meyer, E H, Millar, A H, Heazlewood, J L
Analysis of the Arabidopsis Cytosolic Proteome Highlights Subcellular Partitioning of Central Plant Metabolism
    JOURNAL OF PROTEOME RESEARCH     2010
Minic, Zoran, Jamet, Elisabeth, Négroni, Luc, Arsene der Garabedian, P, Zivy, Michel, Jouanin, Lise
A sub-proteome of Arabidopsis thaliana mature stems trapped on Concanavalin A is enriched in cell wall glycoside hydrolases.
    JOURNAL OF EXPERIMENTAL BOTANY     2007
Jiang, Yuanqing, Yang, Bo, Harris, Neil S, Deyholos, Michael K
Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots.
    JOURNAL OF EXPERIMENTAL BOTANY     2007
Mitra, Srijeet, Gantt, John, Ruby, James, Clouse, Steven, Goshe, Michael
Membrane Proteomic Analysis of Arabidopsis thaliana Using Alternative Solubilization Techniques.
    JOURNAL OF PROTEOME RESEARCH     2007
Dunkley, Tom P J, Hester, Svenja, Shadforth, Ian P, Runions, John, Weimar, Thilo, Hanton, Sally L, Griffin, Julian L, Bessant, Conrad, Brandizzi, Federica, Hawes, Chris, Watson, Rod B, Dupree, Paul, Lilley, Kathryn S
Mapping the Arabidopsis organelle proteome.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA     2006
Boudart G, Jamet E, Rossignol M, Lafitte C, Borderies G, Jauneau A, Esquerre-Tugaye MT, Pont-Lezica R
Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics.
    PROTEOMICS     2005
Borderies, G,Jamet, E,Lafitte, C,Rossignol, M,Jauneau, A,Boudart, G,Monsarrat, B,Esquerre-Tugaye, M T,Boudet, A,Pont-Lezica, R
Proteomics of loosely bound cell wall proteins of Arabidopsis thaliana cell suspension cultures: a critical analysis.
    ELECTROPHORESIS     2003
Gong, Z,Koiwa, H,Cushman, M A,Ray, A,Bufford, D,Kore-Eda, S,Matsumoto, T K,Zhu, J,Cushman, J C,Bressan, R A,Hasegawa, P M
Genes that are uniquely stress regulated in salt overly sensitive (sos) mutants.
    PLANT PHYSIOLOGY     2001
Date last modified (?)    2017-04-16
TAIR Accession (?)    Gene:2014474

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